Changed bootstrap to a logically correct and sensible name, modified it to...

Changed bootstrap to a logically correct and sensible name, modified it to checkout moogli correctly

bootstrap

-#!/bin/bash
-
-# Bootstrap script. Run it to update the repo.
-
-echo "- Updating submodules"
-git submodule update --init
-git submodule foreach git pull origin master

moogli @ 9681522f

-Subproject commit 967c9fbe7519a749cfa00a0248e5b0f63b970998
+Subproject commit 9681522f43bbc0dde26f282138e93e5b5b85aa81

moose-core @ af822336

-Subproject commit e0b5642a1cb25c2620db2f94203afa5ae3def2ef
+Subproject commit af822336e42d4e933f50f664beccadc7a17f058e

update-repository

+#!/bin/bash
+
+# This script updates the repository and its subrepositories, recursively.
+
+git submodule update --init
+git submodule foreach '[ "$path" = "moogli" ] && branch=geometry || branch=master; git pull origin $branch'