HSolve.h

/**********************************************************************
** This program is part of 'MOOSE', the
** Messaging Object Oriented Simulation Environment.
**   copyright (C) 2003-2007 Upinder S. Bhalla, Niraj Dudani and NCBS
** It is made available under the terms of the
** GNU Lesser General Public License version 2.1
** See the file COPYING.LIB for the full notice.
**********************************************************************/

#ifndef _HSOLVE_H
#define _HSOLVE_H
#include <set>
/**
 * HSolve adapts the integrator HSolveActive into a MOOSE class.
 */
class HSolve: public HSolveActive
{
public:
	HSolve();
	
	void process( const Eref& hsolve, ProcPtr p );
	void reinit( const Eref& hsolve, ProcPtr p );
	
	void setSeed( Id seed );
	Id getSeed() const; 		/**< For searching for compartments:
								 *   seed is the starting compt.     */
	
	void setPath( const Eref& e, string path );
	string getPath( const Eref& e ) const;
								/**< Path to the compartments */
	
	void setDt( double dt );
	double getDt() const;
	
	void setCaAdvance( int caAdvance );
	int getCaAdvance() const;
	
	void setVDiv( int vDiv );
	int getVDiv() const;
	
	void setVMin( double vMin );
	double getVMin() const;
	
	void setVMax( double vMax );
	double getVMax() const;
	
	void setCaDiv( int caDiv );
	int getCaDiv() const;
	
	void setCaMin( double caMin );
	double getCaMin() const;
	
	void setCaMax( double caMax );
	double getCaMax() const;
	
	// Interface functions defined in HSolveInterface.cpp
	double getInitVm( Id id ) const;
	void setInitVm( Id id, double value );
	
	double getVm( Id id ) const;
	void setVm( Id id, double value );
	
	double getCm( Id id ) const;
	void setCm( Id id, double value );
	
	double getEm( Id id ) const;
	void setEm( Id id, double value );
	
	double getRm( Id id ) const;
	void setRm( Id id, double value );
	
	double getRa( Id id ) const;
	void setRa( Id id, double value );
	
	// Im is read-only
	double getIm( Id id ) const;
	
	// Ia is read-only
	double getIa( Id id ) const;
	
	double getInject( Id id ) const;
	void setInject( Id id, double value );
	
	void addInject( Id id, double value );
	
	/// Interface to compartments
	//~ const vector< Id >& getCompartments() const;
	
	void addGkEk( Id id, double v1, double v2 );
	
	/// Interface to channels
	//~ const vector< Id >& getHHChannels() const;
	void setPowers(
		Id id,
		double Xpower,
		double Ypower,
		double Zpower );
	
	int getInstant( Id id ) const;
	void setInstant( Id id, int instant );
	
	double getHHChannelGbar( Id id ) const;
	void setHHChannelGbar( Id id, double value );
	
	double getEk( Id id ) const;
	void setEk( Id id, double value );
	
	double getGk( Id id ) const;
	void setGk( Id id, double value );
	
	// Ik is read-only
	double getIk( Id id ) const;
	
	double getX( Id id ) const;
	void setX( Id id, double value );
	
	double getY( Id id ) const;
	void setY( Id id, double value );
	
	double getZ( Id id ) const;
	void setZ( Id id, double value );
	
	/// Assign scale factor for HH channel conductance.
	void setHHmodulation( Id id, double value );

	/// Interface to CaConc
	//~ const vector< Id >& getCaConcs() const;
	double getCa( Id id ) const;
	void setCa( Id id, double Ca );
	void iCa( Id id, double iCa ); // Add incoming calcium current.
	
	double getCaBasal( Id id ) const;
	void setCaBasal( Id id, double CaBasal );
	
	void setTauB( Id id, double tau, double B );
	
	double getCaCeiling( Id id ) const;
	void setCaCeiling( Id id, double floor );
	
	double getCaFloor( Id id ) const;
	void setCaFloor( Id id, double floor );
	
	/// Interface to external channels
	//~ const vector< vector< Id > >& getExternalChannels() const;
	
	static const Cinfo* initCinfo();

    static const std::set<string>& handledClasses();
						/**< Returns the set of classes "handled" by HSolve */
    static void deleteIncomingMessages( Element * orig, const string finfo);
						/**< Delete messages coming into this particular
						 *   element if its class that is handled by HSolve */
	
private:
	static vector< Id > children( Id obj );
	static Id deepSearchForCompartment( Id base );
	
	void setup( Eref hsolve );
	void zombify( Eref hsolve ) const;
	
	// Mapping global Id to local index. Defined in HSolveInterface.cpp.
	void mapIds();
	void mapIds( vector< Id > id );
	unsigned int localIndex( Id id ) const;
	map< Id, unsigned int > localIndex_;
	
	double dt_;
	string path_;
	Id seed_;
};

#endif // _HSOLVE_H