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Dilawar Singh authored
git-subtree-dir: moose-core git-subtree-split: fe77059f98c5a6cab2e106f78b7eb505f4f62850
e6e83b76
CMakeLists.txt 14.17 KiB
set(CMAKE_LEGACY_CYGWIN_WIN32 0)
cmake_minimum_required(VERSION 2.6.0 FATAL_ERROR)
if(COMMAND cmake_policy)
cmake_policy(SET CMP0003 NEW)
cmake_policy(SET CMP0004 OLD)
if(POLICY CMP0050)
cmake_policy(SET CMP0050 OLD)
endif(POLICY CMP0050)
endif(COMMAND cmake_policy)
project(MOOSE)
include(CheckCXXCompiler.cmake)
include(CheckIncludeFileCXX)
include(FindPkgConfig)
# If from command line, version info is not passed, use the git to generate a
# version file. If GIT fails, use the previous known version.
set(VERSION_FILE ${CMAKE_CURRENT_SOURCE_DIR}/VERSION)
find_program(GIT_EXEC "git")
message( STATUS "Looking for git ${GIT_EXEC}" )
if( (NOT MOOSE_VERSION) AND GIT_EXEC)
execute_process(
COMMAND ${GIT_EXEC} describe --tags --long
WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
OUTPUT_VARIABLE MOOSE_VERSION
OUTPUT_STRIP_TRAILING_WHITESPACE
)
message(STATUS "+ Writing ${MOOSE_VERSION} to ${VERSION_FILE}" )
file(WRITE ${VERSION_FILE} ${MOOSE_VERSION})
elseif( (NOT MOOSE_VERSION) AND (NOT GIT_EXEC) )
message(STATUS "+ Reading ${VERSION_FILE}" )
file(READ ${VERSION_FILE} GIT_VERSION_OUTPUT )
elseif(MOOSE_VERSION)
message(STATUS "+ Using user specified VERSION = ${MOOSE_VERSION}" )
file(WRITE ${VERSION_FILE} ${MOOSE_VERSION})
else()
message(FATAL_ERROR "Could not determine MOOSE_VERSION" )
endif( )
add_definitions( -DMOOSE_VERSION="${MOOSE_VERSION}")
message( STATUS "MOOSE Version ${MOOSE_VERSION}" )
# This snippet is from LLVM project.
# Sanity check our source directory to make sure that we are not trying to
# generate an in-tree build (unless on MSVC_IDE, where it is ok), and to make
# sure that we don't have any stray generated files lying around in the tree
# (which would end up getting picked up by header search, instead of the correct
# versions).
message(STATUS "CMAKE_INSTALL_PREFIX : ${CMAKE_INSTALL_PREFIX}")
if( CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_BINARY_DIR AND NOT MSVC_IDE )
message(FATAL_ERROR
"======================================================================\n"
"In-source builds are not allowed. Remove CMakeCache.txt and CMakeFiles\n"
"directory and do something like this inside this directory \n"
" $ mkdir _build_dir \n"
" $ cd _build_dir \n"
" $ cmake .. \n"
"===================================================================== \n"
)
endif()
# uninstall target
configure_file(
"${CMAKE_CURRENT_SOURCE_DIR}/cmake_uninstall.cmake.in"
"${CMAKE_CURRENT_BINARY_DIR}/cmake_uninstall.cmake"
IMMEDIATE @ONLY
)
add_custom_target(uninstall
COMMAND ${CMAKE_COMMAND} -P
${CMAKE_CURRENT_BINARY_DIR}/cmake_uninstall.cmake
)
# This is for testing purpose.
link_directories(${CMAKE_CURRENT_BINARY_DIR})
################################# OS Specific ##################################
message(STATUS "Operating system: ${CMAKE_SYSTEM_NAME}")
if(${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
CMAKE_POLICY(SET CMP0042 NEW)
set(MACOSX TRUE)
else()
set(MACOSX FALSE)
endif()
################################ CMAKE OPTIONS ##################################
option(VERBOSITY "Set MOOSE verbosity level (deprecated)" 0)
## Unit testing and debug mode.
option(DEBUG "Build with debug support" OFF)
option(GPROF "Build for profiling using gprof" OFF)
option(ENABLE_UNIT_TESTS "Enable unit tests (DEBUG should also be ON)" OFF)
option(WITH_PYTHON "Build native python extension" ON)
option(WITH_MPI "Enable Openmpi support" OFF)
option(WITH_BOOST "Use boost library instead of GSL" OFF)
option(WITH_GSL "Use gsl-library. Alternative is WITH_BOOST" ON)
################################# CMKAE MACROS #################################
set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake_modules")
############################ BUILD CONFIGURATION #################################
# Default macros
add_definitions(-DUSE_GENESIS_PARSER)
if(DEBUG)
message(STATUS "Building for Debug/Unit testing")
add_definitions(-DDO_UNIT_TESTS)
set(CMAKE_BUILD_TYPE Debug)
elseif(ENABLE_UNIT_TESTS)
MESSAGE(STATUS "Enabled Unit tests")
add_definitions(-DDO_UNIT_TESTS)
set(CMAKE_BUILD_TYPE Debug)
else()
message(STATUS "Building for Release/No unit tests.")
set(CMAKE_BUILD_TYPE Release)
add_definitions(-UDO_UNIT_TESTS -DQUIET_MODE -O3)
endif()
if(GPROF AND DEBUG)
message(STATUS "Compiling with profiling with gprof")
add_definitions(-pg)
set(CMAKE_EXE_LINKER_FLAGS_DEBUG "-pg")
endif()
################################### TARGETS ####################################
add_library(libmoose SHARED basecode/main.cpp)
add_executable(moose.bin basecode/main.cpp)
################################### SETUP BUILD ################################
# default include paths.
include_directories( ${CMAKE_CURRENT_SOURCE_DIR} )
if(WITH_BOOST) set(WITH_GSL OFF)
endif(WITH_BOOST)
include_directories(msg basecode)
set_target_properties(libmoose PROPERTIES COMPILE_DEFINITIONS "MOOSE_LIB")
set_target_properties(libmoose PROPERTIES PREFIX "")
## Variable to collect all static libraries.
set(STATIC_LIBRARIES "" )
# Collect all shared libraries here.
set(SYSTEM_SHARED_LIBS ${LibXML2_LIBRARIES})
if(WITH_GSL)
find_package(GSL 1.16)
if(NOT GSL_FOUND)
message(FATAL_ERROR
"=====================================================================\n"
" FATAL gsl(>1.16) not found.\n\n"
" MOOSE requires Gnu Scientific Library (GSL) 1.16 or higher. \n"
" Please install the `dev` or `devel` package e.g. \n"
" $ sudo apt-get install libgsl0-dev \n"
" $ sudo yum install libgsl-devel \n"
" $ brew install gsl \n\n"
" Or build and install gsl from source code \n"
" https://www.gnu.org/software/gsl/ \n"
" After installing gsl, rerun cmake.\n\n"
" If you install gsl in non-standard place, set the GSL_ROOT_DIR environment \n"
" variable. CMAKE use this to search for required files. \n"
"====================================================================\n"
)
endif(NOT GSL_FOUND)
add_definitions(-DUSE_GSL)
# GSL is also used in RNG (whenever applicable), therefore include paths are
# top level.
include_directories( ${GSL_INCLUDE_DIRS} )
elseif(WITH_BOOST)
find_package(Boost 1.44 COMPONENTS system filesystem random REQUIRED)
find_package( LAPACK REQUIRED )
add_definitions( -DUSE_BOOST -UUSE_GSL )
include_directories( ${Boost_INCLUDE_DIRS} )
check_include_file_cxx(
${Boost_INCLUDE_DIRS}/boost/random/random_device.hpp
BOOST_RANDOM_DEVICE_EXISTS
)
if(BOOST_RANDOM_DEVICE_EXISTS)
add_definitions(-DBOOST_RANDOM_DEVICE_EXISTS)
endif(BOOST_RANDOM_DEVICE_EXISTS)
endif()
find_package(HDF5 COMPONENTS CXX HL)
if(NOT HDF5_FOUND)
message(
"==================================================================\n"
" HDF5 not found. Disabling support. Required for nsdf. \n\n"
" If you need hdf5 support, please install hdf5-dev or hdf5-devel\n"
" package or equivalent.\n\n"
" $ sudo apt-get install libhdf5-dev \n"
" $ sudo yum install libhdf5-devel \n"
" $ brew install hdf5 \n\n"
" Otherwise, continue with 'make' and 'make install' \n"
" If you install hdf5 to non-standard path, export environment \n"
" variable HDF5_ROOT to the location. Rerun cmake \n"
"================================================================ \n"
)
endif(NOT HDF5_FOUND)
if(HDF5_FOUND)
include_directories( ${HDF5_INCLUDE_DIRS} ) add_definitions( -DUSE_HDF5 )
if(HDF5_USE_STATIC_LIBRARIES)
message(STATUS "Finding static HDF5 libraries in $ENV{HDF5_ROOT}")
find_library(HDF5_CXX_LIBRARIES NAMES libhdf5.a
PATHS $ENV{HDF5_ROOT}/lib $ENV{HDF5_ROOT}/lib64
)
find_library(HDF5_HL_LIBRARIES NAMES libhdf5_hl.a
PATHS $ENV{HDF5_ROOT}/lib $ENV{HDF5_ROOT}/lib64
)
set(HDF5_LIBRARIES ${HDF5_CXX_LIBRARIES} ${HDF5_HL_LIBRARIES})
endif()
# Make sure, HDF5_HL_LIBRARIES are set. The COMPONENTS in find_package may
# or may not work. See BhallaLab/moose-core#163.
if(NOT HDF5_HL_LIBRARIES)
set(HDF5_HL_LIBRARIES ${HDF5_HL_LIBRARIES})
endif(NOT HDF5_HL_LIBRARIES)
list(APPEND HDF5_LIBRARIES ${HDF5_HL_LIBRARIES})
message(STATUS "MOOSE will use following HDF5 ${HDF5_LIBRARIES}" )
foreach(HDF5_LIB ${HDF5_LIBRARIES})
if(HDF5_LIB)
get_filename_component( HDF5_LIB_EXT ${HDF5_LIB} EXT )
if(HDF5_LIB_EXT)
if(${HDF5_LIB_EXT} STREQUAL ".a")
list(APPEND STATIC_LIBRARIES ${HDF5_LIB} )
else( )
list(APPEND SYSTEM_SHARED_LIBS ${HDF5_LIB} )
endif( )
endif()
endif( )
endforeach( )
else( HDF5_FOUND )
message(STATUS "HDF5 is not found" )
endif( HDF5_FOUND )
# This is a fix for new HDF5 package on Debian/Ubuntu which installs hdf5
# headers in non-standard path. issue #80.
if(HDF5_LIBRARY_DIRS)
set_target_properties( libmoose PROPERTIES LINK_FLAGS "-L${HDF5_LIBRARY_DIRS}" )
endif()
find_package(Termcap)
find_package(Readline)
if(READLINE_FOUND AND TERMCAP_FOUND)
add_definitions(-DUSE_READLINE)
include_directories(${Readline_INCLUDE_DIR})
endif()
# Openmpi
if(WITH_MPI)
find_package(MPI REQUIRED)
if(MPI_CXX_FOUND)
message(STATUS "Using MPI from ${MPI_CXX_INCLUDE_PATH}")
include_directories(${MPI_CXX_INCLUDE_PATH})
set(CMAKE_CXX_COMPILE_FLAGS ${CMAKE_CXX_COMPILE_FLAGS} ${MPI_COMPILE_FLAGS})
add_definitions(-DUSE_MPI)
SET(CMAKE_CXX_COMPILER ${MPI_CXX_COMPILER})
SET(CMAKE_C_COMPILER ${MPI_C_COMPILER})
else()
message(STATUS "Cound not find MPI")
add_definitions(-UUSE_MPI)
endif()
endif(WITH_MPI)
if(WITH_BOOST)
list(APPEND SYSTEM_SHARED_LIBS ${LAPACK_LIBRARIES})
list(APPEND SYSTEM_SHARED_LIBS ${Boost_LIBRARIES})endif(WITH_BOOST)
# These libraries could be static of dynamic. We need to discrimate between
# these two types because of --whole-archive option. See
# BhallaLab/moose-core#66,
if(WITH_GSL)
message(STATUS "Using gsl libraries: ${GSL_LIBRARIES}")
foreach(GSL_LIB ${GSL_LIBRARIES} )
if(GSL_LIB)
get_filename_component( GSL_LIB_EXT ${GSL_LIB} EXT )
if(GSL_LIB_EXT)
if(GSL_LIB_EXT STREQUAL ".a" )
list(APPEND STATIC_LIBRARIES ${GSL_LIB})
else()
list(APPEND SYSTEM_SHARED_LIBS ${GSL_LIB})
endif( )
endif( )
endif( )
endforeach( )
endif()
if(WITH_MPI)
if(MPI_CXX_FOUND)
list(APPEND SYSTEM_SHARED_LIBS ${MPI_CXX_LIBRARIES})
endif()
endif(WITH_MPI)
pkg_check_modules(MUPARSER muparser)
if(MUPARSER_FOUND)
message(STATUS "Using system muparser ${MUPARSER_VERSION}")
list(APPEND SYSTEM_SHARED_LIBS ${MUPARSER_LIBRARIES})
else()
message(STATUS "Using private muparser")
add_subdirectory(external/muparser)
list(APPEND MOOSE_LIBRARIES muparser)
endif()
# Add subdirectroeis
add_subdirectory(basecode)
add_subdirectory(msg)
add_subdirectory(shell)
add_subdirectory(randnum)
add_subdirectory(scheduling)
add_subdirectory(biophysics)
add_subdirectory(builtins)
add_subdirectory(utility)
add_subdirectory(mesh)
add_subdirectory(mpi)
add_subdirectory(signeur)
add_subdirectory(ksolve)
add_subdirectory(hsolve)
add_subdirectory(diffusion)
add_subdirectory(device)
add_subdirectory(benchmarks)
add_subdirectory(kinetics)
add_subdirectory(synapse)
add_subdirectory(intfire)
###################################### LINKING #################################
list(APPEND MOOSE_LIBRARIES
moose_builtins
msg
benchmarks
shell
randnum
scheduling
moose_mpi
biophysics
utility
kinetics synapse
intfire
hsolve
mesh
signeur
diffusion
ksolve
device
basecode
)
# Make sure to remove duplicates.
list(REMOVE_DUPLICATES STATIC_LIBRARIES)
if(SYSTEM_SHARED_LIBS)
list(REMOVE_DUPLICATES SYSTEM_SHARED_LIBS)
endif( )
# MAC linker does not understand many of gnu-ld options.
message( STATUS "Shared libs: ${SYSTEM_SHARED_LIBS}")
if(MACOSX)
target_link_libraries(libmoose
"-Wl,-all_load"
${MOOSE_LIBRARIES}
${STATIC_LIBRARIES}
)
target_link_libraries(libmoose
${SYSTEM_SHARED_LIBS}
${CMAKE_DL_LIBS}
)
ELSE(MACOSX)
target_link_libraries(libmoose
"-Wl,--whole-archive"
${MOOSE_LIBRARIES}
${STATIC_LIBRARIES}
"-Wl,--no-whole-archive"
${SYSTEM_SHARED_LIBS}
)
endif(MACOSX)
add_dependencies(moose.bin libmoose)
target_link_libraries(moose.bin moose ${CMAKE_DL_LIBS})
if( WITH_BOOST )
target_link_libraries( moose.bin ${Boost_LIBRARIES} )
endif( WITH_BOOST )
######################### BUILD PYMOOSE ########################################
# Root of all python module.
if(WITH_PYTHON)
add_subdirectory( pymoose )
endif(WITH_PYTHON)
######################### INSTALL ##############################################
install(TARGETS moose.bin
DESTINATION bin
)
install(TARGETS libmoose
DESTINATION lib
)
install(PROGRAMS ${CMAKE_CURRENT_SOURCE_DIR}/scripts/moose
DESTINATION bin
)
# This target is built by pymoose/CMakeLists.txt file.
if(WITH_PYTHON)
install(CODE "
execute_process(
COMMAND ${PYTHON_EXECUTABLE} setup.py install --prefix=${CMAKE_INSTALL_PREFIX}
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/python
)
"
)
endif(WITH_PYTHON)
# Print message to start build process
if(${CMAKE_BUILD_TOOL} MATCHES "make")
message(
"=======================================\n"
"If cmake did not report any error, run \n"
" 'make' to build MOOSE \n"
"=======================================\n"
)
endif()
############################ CTEST ######################################
include(${CMAKE_CURRENT_SOURCE_DIR}/MooseTests.cmake)
############################ CPACK ######################################
include(${CMAKE_CURRENT_SOURCE_DIR}/cmake_moose_cpack.cmake)