Replace `subPathExpr` with kustomization replacement

base/job.yml

@@ -105,10 +105,10 @@ spec:
           mountPath: /.cache
         - name: data
           mountPath: /streamflow/results
-          subPathExpr: $(JOB_ID)/output
+          subPath: JOB_ID/output
         - name: data
           mountPath: /streamflow/project/input
-          subPathExpr: $(JOB_ID)/input
+          subPath: JOB_ID/input
           readOnly: true
         resources:
           limits:

compile-java/1/kustomization.yml

@@ -11,3 +11,20 @@ configMapGenerator:
   - streamflow.yml
   envs:
   - env
+
+replacements:
+# NOTE this is a workaround for K8s<1.17 that dont support subPathExpr
+- source:
+    kind: ConfigMap
+    name: streamflow-config
+    fieldPath: data.JOB_ID
+  targets:
+  - select:
+      kind: Job
+      name: streamflow
+    fieldPaths:
+    - 'spec.template.spec.containers.[name=streamflow].volumeMounts.[name=data].subPath'
+    options:
+      index: 0
+      delimiter: '/'
+      create: true

compile-java/2/kustomization.yml

@@ -11,3 +11,21 @@ configMapGenerator:
   - streamflow.yml
   envs:
   - env
+
+replacements:
+# NOTE this is a workaround for K8s<1.17 that dont support subPathExpr
+- source:
+    kind: ConfigMap
+    name: streamflow-config
+    fieldPath: data.JOB_ID
+  targets:
+  - select:
+      kind: Job
+      name: streamflow
+    fieldPaths:
+    - 'spec.template.spec.containers.[name=streamflow].volumeMounts.[name=data].subPath'
+    options:
+      index: 0
+      delimiter: '/'
+      create: true
+

echo/1/kustomization.yml

@@ -11,3 +11,20 @@ configMapGenerator:
   - streamflow.yml
   envs:
   - env
+
+replacements:
+# NOTE this is a workaround for K8s<1.17 that dont support subPathExpr
+- source:
+    kind: ConfigMap
+    name: streamflow-config
+    fieldPath: data.JOB_ID
+  targets:
+  - select:
+      kind: Job
+      name: streamflow
+    fieldPaths:
+    - 'spec.template.spec.containers.[name=streamflow].volumeMounts.[name=data].subPath'
+    options:
+      index: 0
+      delimiter: '/'
+      create: true

echo/2/kustomization.yml

@@ -11,3 +11,20 @@ configMapGenerator:
   - streamflow.yml
   envs:
   - env
+
+replacements:
+# NOTE this is a workaround for K8s<1.17 that dont support subPathExpr
+- source:
+    kind: ConfigMap
+    name: streamflow-config
+    fieldPath: data.JOB_ID
+  targets:
+  - select:
+      kind: Job
+      name: streamflow
+    fieldPaths:
+    - 'spec.template.spec.containers.[name=streamflow].volumeMounts.[name=data].subPath'
+    options:
+      index: 0
+      delimiter: '/'
+      create: true

echo/3/kustomization.yml

@@ -11,3 +11,21 @@ configMapGenerator:
   - streamflow.yml
   envs:
   - env
+
+replacements:
+# NOTE this is a workaround for K8s<1.17 that dont support subPathExpr
+- source:
+    kind: ConfigMap
+    name: streamflow-config
+    fieldPath: data.JOB_ID
+  targets:
+  - select:
+      kind: Job
+      name: streamflow
+    fieldPaths:
+    - 'spec.template.spec.containers.[name=streamflow].volumeMounts.[name=data].subPath'
+    options:
+      index: 0
+      delimiter: '/'
+      create: true
+  

echo/4/kustomization.yml

@@ -11,3 +11,20 @@ configMapGenerator:
   - streamflow.yml
   envs:
   - env
+
+replacements:
+# NOTE this is a workaround for K8s<1.17 that dont support subPathExpr
+- source:
+    kind: ConfigMap
+    name: streamflow-config
+    fieldPath: data.JOB_ID
+  targets:
+  - select:
+      kind: Job
+      name: streamflow
+    fieldPaths:
+    - 'spec.template.spec.containers.[name=streamflow].volumeMounts.[name=data].subPath'
+    options:
+      index: 0
+      delimiter: '/'
+      create: true

psd/1/input.yml

 input_file:
   class: File
-  #location: 'https://data-proxy.ebrains.eu/api/v1/permalinks/06b0b2c8-31cb-4108-b6a7-0d275e118339'
-  path: 'input/1.mat'
+  location: 'https://data-proxy.ebrains.eu/api/v1/permalinks/06b0b2c8-31cb-4108-b6a7-0d275e118339'
+  #path: 'input/1.mat'
 channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9]
 psd_output_file_name: 'psd.json'
 output_file_name: 'output.png'

psd/1/kustomization.yml

@@ -15,3 +15,20 @@ configMapGenerator:
   - streamflow.yml
   envs:
   - env
+
+replacements:
+# NOTE this is a workaround for K8s<1.17 that dont support subPathExpr
+- source:
+    kind: ConfigMap
+    name: streamflow-config
+    fieldPath: data.JOB_ID
+  targets:
+  - select:
+      kind: Job
+      name: streamflow
+    fieldPaths:
+    - 'spec.template.spec.containers.[name=streamflow].volumeMounts.[name=data].subPath'
+    options:
+      index: 0
+      delimiter: '/'
+      create: true