Draft: feat add: py-neuralactivitycubic
Summary
| Package | py-neuralactivitycubic |
| Contact point | mloshakov |
| KG entry | none |
Checks
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Software Quality Checklist: SQ-Checklist.pdf (level: ) -
Current maintainer is listed first in package.py -
No pinned dependency versions -
Post-installation tests are defined
Merge request reports
Activity
@mloshakov first of all, sorry for the huge delay in looking into this, it was unfortunately blocked by a rather major and long overdue update in the ESD software deployment in the EBRAINS Lab.
In the
spack_v0.23.0branch, we have updated the python version to3.11, and are now finalising some still failing packages, so I rebased to run the test build correctly. I couldn't force push to yourmasterbranch, so I opened a new MR from a new branch. (to avoid this in general it's not recommended to usemasteras a source of a MR)added 31 commits
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305711fc...a2c6e582 - 22 commits from branch
ri/tech-hub/platform/esd:spack_v0.23.0 - 112c0e41 - feat: add pybaselines
- 657600b4 - fix: remove dependency from spack.yaml
- 1e751de9 - feat: add py-ipyfilechooser
- 15c3c687 - feat: add py-neuralactivitycubic
- a2b451f4 - feat: add py-roifile
- 6bc042aa - fix: py-roifile license
- 2c822c52 - fix: maybe fixed python versions
- 967aec4b - fix python versions one more time
- ca273cea - fix the permission change
Toggle commit list-
305711fc...a2c6e582 - 22 commits from branch
mentioned in merge request !599 (closed)
Hm, the pipeline can't clone the repo
remote: You are not allowed to download code from this project. fatal: unable to access 'https://gitlab.ebrains.eu/mloshakov/ebrains-spack-builds.git/': The requested URL returned error: 403Could you please make your fork public or trigger the pipeline yourself here (->
Run pipeline)?added 29 commits
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ca273cea...3f89dca0 - 20 commits from branch
ri/tech-hub/platform/esd:spack_v0.23.0 - a29ccb9f - feat: add pybaselines
- b18ef44f - fix: remove dependency from spack.yaml
- af5a7422 - feat: add py-ipyfilechooser
- ca6a9b28 - feat: add py-neuralactivitycubic
- 17a08d56 - feat: add py-roifile
- 405cdf07 - fix: py-roifile license
- 2200950b - fix: maybe fixed python versions
- ee29ada1 - fix python versions one more time
- 5774c0a5 - fix the permission change
Toggle commit list-
ca273cea...3f89dca0 - 20 commits from branch
- packages/py-neuralactivitycubic/package.py 0 → 100644
15 16 version("0.0.3", sha256="516e99e44a70d83f526a128e653a63c6b7ae4ffbe362fe7854121999a7c8fecb") 17 18 depends_on("python@3.8:", type=("build", "run")) 19 depends_on("py-ipywidgets@8.0.2:8", type=("build", "run")) 20 depends_on("py-ipyfilechooser@0.6.0", type=("build", "run")) 21 depends_on("py-imageio@2.30:2", type=("build", "run")) 22 depends_on("py-imageio-ffmpeg@0.4:0.5", type=("build", "run")) 23 depends_on("py-matplotlib@3.8:3.9", type=("build", "run")) 24 depends_on("py-scipy@1.11.4", type=("build", "run")) 25 depends_on("py-numpy@1.26.2", type=("build", "run")) 26 depends_on("py-pandas@2.2.1", type=("build", "run")) 27 depends_on("py-pybaselines@1.1.0", type=("build", "run")) 28 depends_on("py-roifile@2024.1.10", type=("build", "run")) 29 depends_on("py-shapely@2.0.1", type=("build", "run")) 30 depends_on("py-scikit-image@0.22.0", type=("build", "run")) - Comment on lines +20 to +30
Most of these dependencies are pinned to a specific version, meaning that for e.g. exactly
py-scipy@1.11.4needs to be installed in the environment, which obviously causes conflicts with the rest of the packages of the ESD. Are those minimum versions? Could you instead provide a range of versions for each dependency, e.g.py-scipy@1.11.4:? @elmath I lack permissions to push commit to this specific branch (or don't understand how I am supposed to do that)
changed this line in version 17 of the diff
added 32 commits
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5774c0a5...3474b5d6 - 23 commits from branch
ri/tech-hub/platform/esd:spack_v0.23.0 - 5feac054 - feat: add pybaselines
- e2151e74 - fix: remove dependency from spack.yaml
- d9661ac4 - feat: add py-ipyfilechooser
- 52916962 - feat: add py-neuralactivitycubic
- 513af26a - feat: add py-roifile
- da90d4fd - fix: py-roifile license
- 8d867b3c - fix: maybe fixed python versions
- 8784c73b - fix python versions one more time
- 135fe5cc - fix the permission change
Toggle commit list-
5774c0a5...3474b5d6 - 23 commits from branch
added 97 commits
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135fe5cc...63c4f74e - 17 commits from branch
ri/tech-hub/platform/esd:spack_v0.23.0 - 63c4f74e...ad8f784f - 70 earlier commits
- 5abe11f8 - feat(py-vbi): add version 0.1.3.2 and update dependency in spack.yaml
- bb33831f - feat: add pybaselines
- fee45ae0 - fix: remove dependency from spack.yaml
- e409e354 - feat: add py-ipyfilechooser
- eed7d518 - feat: add py-neuralactivitycubic
- 3fb961ab - feat: add py-roifile
- eb92e8e1 - fix: py-roifile license
- 4388493a - fix: maybe fixed python versions
- a60cc146 - fix python versions one more time
- aeef7a9f - fix the permission change
Toggle commit list-
135fe5cc...63c4f74e - 17 commits from branch
21 21 depends_on("py-imageio@2.30:2", type=("build", "run")) 22 22 depends_on("py-imageio-ffmpeg@0.4:0.5", type=("build", "run")) 23 23 depends_on("py-matplotlib@3.8:3.9", type=("build", "run")) 24 depends_on("py-scipy@1.11.4", type=("build", "run")) 25 depends_on("py-numpy@1.26.2", type=("build", "run")) 26 depends_on("py-pandas@2.2.1", type=("build", "run")) 27 depends_on("py-pybaselines@1.1.0", type=("build", "run")) 28 depends_on("py-roifile@2024.1.10", type=("build", "run")) 29 depends_on("py-shapely@2.0.1", type=("build", "run")) 30 depends_on("py-scikit-image@0.22.0", type=("build", "run")) 31 32 depends_on("py-jupyterlab@4.2.3", type=("run")) 24 depends_on("py-scipy@1.11.4:", type=("build", "run"))
