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biobb packages: update versions

Eleni Mathioulaki requested to merge update-biobb-packages into master

Hi @dbeltran,

While preparing the next release, I noticed that there are new versions of the biobb-* packages missing from the current EBRAINS software environment.

I went ahead and added them, and the test build job completed successfully - I'd just like your confirmation on whether it's OK as is, or any changes (e.g. to dependencies versions) are needed. (with the new versions we also don't need the patches we introduced to fix #44)

Due to delays, the code freeze that was scheduled for Friday has been postponed to tomorrow. Could you have a look and let me know until then, to make sure it's part of the release candidate?

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