R package SBtabVFGEN

This is our SBtab to vfgen conversion package. It has no hard dependencies (only recommended).

hi @akramer, don't forget to add the entry for each package on spack.yaml. You can add the commit to your branch add-r-sbtabvfgen and this MR will automatically be updated, and the pipeline re-triggered. Thanks! (There are some things I need to finish fist, but I will merge these late today/early tomorrow)

added 1 commit

• b3193f36 - add entry to spack.yaml

Compare with previous version

Hi @akramer, I added the entry to spack.yaml myself, but the pipeline failed. From the build logs:

==> r-sbtabvfgen: Executing phase: 'install'
==> [2023-02-20-15:25:34.786287] '/builds/akramer/ebrains-spack-builds/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-10.3.0/r-4.1.3-34c6cvfipokzmwwtxn7d3vrw74qat4jr/bin/R' '--vanilla' 'CMD' 'INSTALL' '--library=/builds/akramer/ebrains-spack-builds/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-10.3.0/r-sbtabvfgen-0.1-33723gmno3xznhnc25ttfp5tlncx252a/rlib/R/library' '/tmp/root/spack-stage/spack-stage-r-sbtabvfgen-0.1-33723gmno3xznhnc25ttfp5tlncx252a/spack-src'
ERROR: dependency 'pracma' is not available for package 'SBtabVFGEN'
* removing '/builds/akramer/ebrains-spack-builds/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-10.3.0/r-sbtabvfgen-0.1-33723gmno3xznhnc25ttfp5tlncx252a/rlib/R/library/SBtabVFGEN'

You can find the build logs of the pipeline by clicking on build-spack-env-on-runner (the job name) then on the right Job artifacts, Browse, ... spack-build-out.txt

added 1 commit

• 0da0ffcb - sbtabvfgen pracma dependency added to package.py

Compare with previous version

Hi Eleni @elmath Thank you. And also: sorry for neglecting spack.yaml. I have added that r-pracma dependency to this package. Shall I re-submit the merge request? Best, Andrei

Thanks @akramer! You don't need to do anything else, everything looks fine, I'll merge these very soon. Thanks!

added 26 commits

• 0da0ffcb...e00a8e34 - 25 commits from branch technical-coordination/project-internal/devops/platform:master
• 8fb8125f - Merge branch 'master' into 'add-r-sbtabvfgen'

Compare with previous version

mentioned in commit 1899de87

merged

@akramer this was successfully deployed to the lab-int. Could you validate that everything works as expected?

This has worked, except that the jupyter notebook demo uses some plotting functions from other packages, so we need that meta-package with the notebook dependencies after all. Otherwise it has worked on lab-int. Olivia has submitted changes to the meta packge.