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new version of Snudda and fixes in dependencies

Merged new version of Snudda and fixes in dependencies
(removed):add_snudda into master
Merged Eleni Mathioulaki requested to merge (removed):add_snudda into master
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packages/py-bluepyopt/package.py
+ 32
− 29
##############################################################################
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# (this package was adapted from https://github.com/BlueBrain/spack/blob/develop/bluebrain/repo-bluebrain/packages/py-bluepyopt/package.py)
from spack import *
@@ -12,34 +10,39 @@ class PyBluepyopt(PythonPackage):
homepage = "https://github.com/BlueBrain/BluePyOpt"
pypi = "bluepyopt/bluepyopt-1.9.27.tar.gz"
maintainers = ["hjorth", "elmath"]
# NOTE : while adding new release check pmi_rank.patch compatibility
version('1.10.38', sha256='fb1411c6a8fbfac52d36b837225bae882fd6524acfb4d0580189312ef3c1cfcc')
version('1.9.37', sha256='4399af71de48b288832e92f0de73c431bf88d6e76e2c4ea250c3b38fb38a45a8')
version('1.9.27', sha256='4cce15b92b32311c808cae5e005b664deb6e8dc5df4ca13ea7b59252ae346522')
version('1.8.68', sha256='b9d432840aab89d4863c935d3dc604816441eba02d731422b92056cee751ca9c')
version('1.6.56', sha256='1c57c91465ca4b947fe157692e7004a3e6df02e4151e3dc77a8831382a8f1ab9')
version('1.8.68', sha256='b9d432840aab89d4863c935d3dc604816441eba02d731422b92056cee751ca9c')
version('1.9.12', sha256='7b623ab9168f460a85d952719ca5249248fc95e6f7a02658b0673b2baa0a8fc6')
version("1.12.63", sha256="ec33abe2113767420cae0317da4d61554eb934e5447cadb54d66620576b97714")
version("1.11.47", sha256="cffe1698930e3e89544c441674a5f66e310c72db27f8265b17200713d9d16614")
version("1.10.38", sha256="fb1411c6a8fbfac52d36b837225bae882fd6524acfb4d0580189312ef3c1cfcc")
version("1.9.37", sha256="4399af71de48b288832e92f0de73c431bf88d6e76e2c4ea250c3b38fb38a45a8")
version("1.9.27", sha256="4cce15b92b32311c808cae5e005b664deb6e8dc5df4ca13ea7b59252ae346522")
version("1.8.68", sha256="b9d432840aab89d4863c935d3dc604816441eba02d731422b92056cee751ca9c")
version("1.6.56", sha256="1c57c91465ca4b947fe157692e7004a3e6df02e4151e3dc77a8831382a8f1ab9")
version("1.8.68", sha256="b9d432840aab89d4863c935d3dc604816441eba02d731422b92056cee751ca9c")
version("1.9.12", sha256="7b623ab9168f460a85d952719ca5249248fc95e6f7a02658b0673b2baa0a8fc6")
# patch required to avoid hpe-mpi linked mechanism library
patch("pmi_rank.patch", when="@1.9.27:")
variant('neuron', default=True, description="Use BluePyOpt together with NEURON")
depends_on('py-setuptools', type='build')
depends_on('py-pandas', type='run')
depends_on('py-numpy', type='run')
depends_on('py-efel', type='run')
depends_on('py-deap', type='run')
depends_on('py-scoop@0.7:', type='run', when='@:1.9.37')
depends_on('py-ipyparallel', type='run')
depends_on('py-pickleshare', type='run')
depends_on('py-future', type='run')
depends_on('py-jinja2', type='run')
depends_on('py-pebble@4.3.10:', type='run')
depends_on('neuron', type='run', when='+neuron')
variant("neuron", default=True, description="Use BluePyOpt together with NEURON")
depends_on("py-setuptools", type=("build"))
depends_on("py-pandas@0.18:", type=("build","run"))
depends_on("py-numpy@1.6:", type=("build","run"))
depends_on("py-efel@2.13:", type=("build","run"))
depends_on("py-deap", type=("build","run"))
depends_on("py-deap@1.3.3:", type=("build","run"), when="@1.12.63:")
depends_on("py-scoop@0.7:", type=("build","run"), when="@:1.9.37")
depends_on("py-ipyparallel", type=("build","run"))
depends_on("py-pickleshare@0.7.3:", type=("build","run"))
depends_on("py-future", type=("build","run"))
depends_on("py-jinja2@2.8:", type=("build","run"))
depends_on("py-pebble@4.3.10:", type=("build","run"))
depends_on("neuron", type=("build","run"), when="+neuron")
def setup_run_environment(self, env):
env.unset('PMI_RANK')
env.set('NEURON_INIT_MPI', "0")
env.prepend_path('PATH', self.spec['py-ipyparallel'].prefix.bin)
env.unset("PMI_RANK")
env.set("NEURON_INIT_MPI", "0")
env.prepend_path("PATH", self.spec["py-ipyparallel"].prefix.bin)