feat: add py-tvb-ext-{unicore,bucket,xircuits}

packages/py-pytest-tornasync/package.py

+from spack.package import *
+
+
+class PyPytestTornasync(PythonPackage):
+    """
+    py.test plugin for testing Python 3.5+ Tornado code
+    """
+
+    homepage = "https://github.com/eukaryote/pytest-tornasync"
+    pypi = "pytest-tornasync/pytest-tornasync-0.6.0.post2.tar.gz"
+    maintainers = ['ldomide', 'adrianciu']
+
+    license('http://www.opensource.org/licenses/mit-license.php')
+
+    version("0.6.0.post2", sha256="d781b6d951a2e7c08843141d3ff583610b4ea86bfa847714c76edefb576bbe5d")
+
+    depends_on('python@3.5:', type=('build', 'run'))
+    depends_on('py-pytest', type=('build', 'run'))
+    depends_on('py-tornado@5.0:', type=('build', 'run'))
+

packages/py-tvb-contrib/package.py

@@ -12,10 +12,11 @@ class PyTvbContrib(PythonPackage):
     """
 
     homepage = "https://www.thevirtualbrain.org/"
-    pypi = 'tvb-contrib/tvb-contrib-2.9.tar.gz'
+    pypi = 'tvb-contrib/tvb_contrib-2.9.1.tar.gz'
 
     maintainers = ['dionperd', 'paulapopa', "ldomide"]
 
+    version('2.9.1', '23c8cc11737f8b87d8e8db573f9f3701611ccc1b6ca67fac00cd09e6307cae6c')
     version('2.9', '64e5f17c46b67c1f92b3cdfb863c7d5e1d97d913b26521a9567735270bb9ad25')
     version('2.8.2', 'ff5990e979cf1f87046d7bed2c265f9dec50f9d817abaabdf5df7ec4482b5063')
     version('2.8.1', '0b9bc5f837913f1cba007d25ae94c9df51bf43bf19c9fb2af14a90cb6a1e1a66')

packages/py-tvb-ext-bucket/package.py

+from spack import *
+
+
+class PyTvbExtBucket(PythonPackage):
+    """
+    Jupyter Lab extension tvb-ext-bucket for accessing EBRAINS data proxy through a GUI
+    """
+
+    homepage = "https://www.thevirtualbrain.org/"
+    pypi = "tvb-ext-bucket/tvb_ext_bucket-1.0.0.tar.gz"
+    maintainers = ['ldomide', 'adrianciu']
+
+    version("1.0.0", sha256="43c7e75129d65b14ef347d9ce2de4d152b308d5464e015e3577f480a7d75bbee")
+
+    depends_on('py-setuptools', type='build')
+    depends_on('python@3.8:', type=('build', 'run'))
+    depends_on('py-jupyter-server', type=('build', 'run'))
+    depends_on('py-ebrains-drive@0.5.0:', type=('build', 'run'))
+    depends_on('py-hatchling@1.5.0:', type='build')
+    depends_on('py-jupyterlab@3.4.7:3', type=('build', 'run'))
+    depends_on('py-hatch-nodejs-version@0.3.1:', type='build')
+    depends_on('npm', type='build')
+    depends_on('node-js', type='build')
+    depends_on('py-hatch-jupyter-builder', type='build')
+
+    depends_on('py-pytest', type='test')
+    depends_on('py-pytest-asyncio', type='test')
+    depends_on('py-pytest-mock', type='test')
+    depends_on('py-pytest-tornasync', type='test')
+
+    @run_after('install')
+    @on_package_attributes(run_tests=True)
+    def install_test(self):
+        pytest = which('pytest')
+        pytest()

packages/py-tvb-ext-unicore/package.py

+from spack.package import *
+import os
+
+
+class PyTvbExtUnicore(PythonPackage):
+    """"
+    This jupyter extension offers a UI component to monitor HPC jobs through Unicore interface.
+    It allows users to easily switch between computing sites, retrieve details about the jobs, and also cancel them.
+    """
+
+    homepage = "https://www.thevirtualbrain.org/"
+    pypi = "tvb-ext-unicore/tvb-ext-unicore-2.0.0.tar.gz"
+    maintainers = ['ldomide', 'adrianciu']
+
+    version("2.0.0", sha256="85c4176c4a833149245e41e2448e94e5507f44bb7c3ffe1e5cf52f9c9b76e7ad")
+
+    depends_on('py-setuptools', type='build')
+    depends_on('python@3.8:', type=('build', 'run'))
+    depends_on('py-hatchling@1.5:', type='build')
+    depends_on('py-hatch-nodejs-version@0.3.1:', type=('build', 'run'))
+    depends_on('py-hatch-jupyter-builder@0.5:', type='build')
+    depends_on('py-jupyterlab@3.4.7:3', type=('build', 'run'))
+    depends_on('py-jupyter-server', type=('build', 'run'))
+    depends_on('py-pyunicore@1.0:', type=('build', 'run'))
+    depends_on('py-jupyter-packaging@0.10:', type='build')
+    depends_on('npm', type='build')
+    depends_on('node-js', type='build')
+
+    depends_on('py-pytest', type='test')
+    depends_on('py-pytest-mock', type='test')
+
+    @run_after('install')
+    @on_package_attributes(run_tests=True)
+    def install_test(self):
+        os.environ['CLB_AUTH'] = 'test_auth_token'
+        pytest = which('pytest')
+        pytest()

packages/py-tvb-ext-xircuits/package.py

+from spack.package import *
+
+
+class PyTvbExtXircuits(PythonPackage):
+    """"
+    This is a jupyterlab extension built as a prototype for building EBRAINS (including TVB simulator, Siibra API) workflows
+    in a visual and interactive manner. It extends the already existent Xircuits jupyterlab extension by adding new components and new features on top.
+    """
+
+    homepage = "https://www.thevirtualbrain.org/"
+    pypi = "tvb-ext-xircuits/tvb-ext-xircuits-1.1.0.tar.gz"
+    maintainers = ['ldomide', 'adrianciu']
+
+    version("1.1.0", sha256="37c71be6ac8e4abb91501b2eb788167f6142eefd2f36ef061d760d2e61828afd")
+
+    depends_on('py-docutils', type=("build", "run"))
+    depends_on('py-ipykernel', type=("build", "run"))
+    depends_on('py-packaging', type=("build", "run"))
+    depends_on('py-tornado@6.1.0:', type=("build", "run"))
+    depends_on('py-jupyter-core', type=("build", "run"))
+    depends_on('py-jupyter-packaging', type=("build", "run"))
+    depends_on('py-jupyterlab-server@2.11.1:3', type=("build", "run"))
+    depends_on('py-jupyter-server', type=("build", "run"))
+    depends_on('py-notebook-shim@0.1:', type=("build", "run"))
+    depends_on('py-jinja2@3.0.3:', type=("build", "run"))
+    depends_on('py-jupyterlab@3.4.7:3', type=("build", "run"))
+    depends_on('py-jupyterlab-widgets', type=("build", "run"))
+    depends_on('py-nbformat', type=("build", "run"))
+    depends_on('py-numpy', type=("build", "run"))
+    depends_on('py-requests', type=("build", "run"))
+    depends_on('py-gitpython', type=("build", "run"))
+    depends_on('py-pygithub', type=("build", "run"))
+    depends_on('py-pyunicore', type=("build", "run"))
+    depends_on('py-siibra', type=("build", "run"))
+    depends_on('py-tqdm', type=("build", "run"))
+    depends_on('py-tvb-library', type=("build", "run"))
+    depends_on('py-tvb-gdist', type=("build", "run"))
+    depends_on('py-tvb-framework', type=("build", "run"))
+    depends_on('py-tvb-ext-bucket', type=("build", "run"))
+    depends_on('py-tvb-ext-unicore', type=("build", "run"))
+    depends_on('py-tvb-widgets@1.0:', type=("build", "run"))
+
+    depends_on('py-pytest', type='test')
+
+    @run_after('install')
+    @on_package_attributes(run_tests=True)
+    def install_test(self):
+        pytest = which('pytest')
+        pytest('--ignore', 'tvbextxircuits/tests/xircuits/test_generate_description.py')

spack.yaml

@@ -46,14 +46,14 @@ spack:
     - py-siibra@1.0a9
     - py-snudda@2.0.1
     - py-spynnaker@7.0.0
-    - py-tvb-contrib@2.9
-    - py-tvb-data@2.8
     - py-tvb-framework@2.9
-    - py-tvb-gdist@2.2
+    - py-tvb-contrib@2.9.1
     - py-tvb-library@2.9.1
     - py-tvb-multiscale@2.1.0.ebrains
-    - py-tvb-storage@2.9
     - py-tvb-widgets@2.1.0
+    - py-tvb-ext-bucket
+    - py-tvb-ext-unicore
+    - py-tvb-ext-xircuits@1.1.0
     - py-viziphant@0.4.0
     - pynn-brainscales@9.0-a6
     - r-rgsl@0.1.1