Merge branch 'master' into 'ADD_ebrains_drive'

# Conflicts: # spack.yaml

Merge branch 'master' into 'ADD_ebrains_drive'
# Conflicts: # spack.yaml
b2a4169c · Shailesh Appukuttan · 72ed678f · dd0e51d7 · b2a4169c · b2a4169c
Commit b2a4169c authored 3 years ago by Shailesh Appukuttan
--- a/.gitignore
+++ b/.gitignore
+__pycache__
+*.pyc
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -4,12 +4,11 @@ stages:
 # start an OpenShift Job that will build the Spack environment
 .deploy-build-environment:
  stage: deploy
-  before_script:
+  script:
    - oc login "$OPENSHIFT_SERVER" --token="$OPENSHIFT_TOKEN"
    - tar czf ${SPACK_ENV_TAR_FILE} packages/ repo.yaml spack.yaml create_JupyterLab_kernel.sh
    - mkdir copy_folder
    - mv ${SPACK_ENV_TAR_FILE} copy_folder
-  script:
    # create job description file
    - chmod a+x create_job.sh
    - ./create_job.sh $INSTALLATION_ROOT $SPACKIFIED_ENV $OP $SPACK_ENV_TAR_FILE $CI_PIPELINE_ID $BUILD_ENV_DOCKER_IMAGE $LAB_KERNEL_PATH $OKD_CLUSTER_UID
@@ -35,9 +34,11 @@ stages:
  tags:
    - shell-runner

+# Deploy in the lab-int environment the version of the tools to be
+# tested before released to production (push pipeline)
 # deploy on the dev environment of the okd dev cluster at CSCS
 # runs on protected branches only as the token variable is protected
-deploy-dev-environment-cscs:
+deploy-int-release-dev-cscs:
  extends: .deploy-build-environment
  variables:
    OPENSHIFT_SERVER: $CSCS_OPENSHIFT_DEV_SERVER
@@ -54,10 +55,14 @@ deploy-dev-environment-cscs:
  resource_group: shared-NFS-mount-dev-cscs
  only:
    - master
+  except:
+    variables:
+      - $CI_PIPELINE_SOURCE == "schedule"

+# Deploy the production release of tools (manual pipeline)
 # deploy on the production environment of the okd prod cluster at CSCS
 # runs on protected branches only as the token variable is protected
-deploy-prod-environment-cscs:
+deploy-prod-release-prod-cscs:
  extends: .deploy-build-environment
  variables:
    OPENSHIFT_SERVER: $CSCS_OPENSHIFT_PROD_SERVER
@@ -77,9 +82,10 @@ deploy-prod-environment-cscs:
      when: manual
      allow_failure: false

+# Deploy the production release of tools (manual pipeline)
 # deploy on the production environment of the okd prod cluster at JSC
 # runs on protected branches only as the token variable is protected
-deploy-prod-environment-jsc:
+deploy-prod-release-prod-jsc:
  extends: .deploy-build-environment
  variables:
    OPENSHIFT_SERVER: $JSC_OPENSHIFT_PROD_SERVER
@@ -98,3 +104,126 @@ deploy-prod-environment-jsc:
    - if: '$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH && $CI_COMMIT_BRANCH =~ /release/'
      when: manual
      allow_failure: false
+
+# Deploy the experimental release of tools (sheduled pipeline)
+# once a week from latest working version of integration release 
+# (branch=experimental_release) to an experimental JupyterLab kernel
+# deploy on the dev environment of the okd dev cluster at CSCS
+# runs on protected branches only as the token variable is protected
+deploy-exp-release-dev-cscs:
+  extends: .deploy-build-environment
+  variables:
+    OPENSHIFT_SERVER: $CSCS_OPENSHIFT_DEV_SERVER
+    OPENSHIFT_TOKEN: $CSCS_OPENSHIFT_DEV_TOKEN
+    INSTALLATION_ROOT: $CSCS_INSTALLATION_ROOT_DEV
+    SPACKIFIED_ENV: experimental
+    OP: update
+    BUILD_ENV_DOCKER_IMAGE: $CSCS_BUILD_ENV_DOCKER_IMAGE_DEV
+    LAB_KERNEL_PATH: /srv/jupyterlab_kernels/int/experimental
+    OKD_CLUSTER_UID: $CSCS_OKD_DEV_UID
+    #SPACK_ENV_TAR_FILE: ebrains-spack-builds${CI_PIPELINE_ID}.tar.gz
+    SPACK_ENV_TAR_FILE: ebrains-spack-builds.tar.gz
+    OC_PROJECT: jupyterhub-int
+  before_script:
+    - | 
+        head -n -9 create_JupyterLab_kernel.sh > tmp.txt && mv tmp.txt create_JupyterLab_kernel.sh
+        cat << EOS >> create_JupyterLab_kernel.sh
+        mkdir \$LAB_KERNEL_PATH/experimental_release
+        cat <<EOF >\$LAB_KERNEL_PATH/experimental_release/kernel.json
+        {
+         "argv": ["\$LAB_KERNEL_PATH/bin/env.sh", "{connection_file}", "--profile=default"],
+         "display_name": "EBRAINS_experimental_release",
+         "name": "experimental_release",
+         "language": "python"
+        }
+        EOF
+        EOS
+  resource_group: shared-NFS-mount-dev-cscs
+  only:
+    refs:
+      - schedules
+    variables:
+      - $RELEASE == "experimental-dev"
+  allow_failure: false
+
+# Deploy the experimental release of tools (sheduled pipeline)
+# once a week from latest working version of integration release 
+# (branch=experimental_release) to an experimental JupyterLab kernel
+# deploy on the prod environment of the okd prod cluster at CSCS
+# runs on protected branches only as the token variable is protected
+deploy-exp-release-prod-cscs:
+  extends: .deploy-build-environment
+  variables:
+    OPENSHIFT_SERVER: $CSCS_OPENSHIFT_PROD_SERVER
+    OPENSHIFT_TOKEN: $CSCS_OPENSHIFT_PROD_TOKEN
+    INSTALLATION_ROOT: $CSCS_INSTALLATION_ROOT_PROD
+    SPACKIFIED_ENV: experimental
+    OP: update
+    BUILD_ENV_DOCKER_IMAGE: $CSCS_BUILD_ENV_DOCKER_IMAGE_PROD
+    LAB_KERNEL_PATH: /srv/jupyterlab_kernels/prod/experimental
+    OKD_CLUSTER_UID: $CSCS_OKD_PROD_UID
+    #SPACK_ENV_TAR_FILE: ebrains-spack-builds${CI_PIPELINE_ID}.tar.gz
+    SPACK_ENV_TAR_FILE: ebrains-spack-builds.tar.gz
+    OC_PROJECT: jupyterhub
+  before_script:
+    - | 
+        head -n -9 create_JupyterLab_kernel.sh > tmp.txt && mv tmp.txt create_JupyterLab_kernel.sh
+        cat << EOS >> create_JupyterLab_kernel.sh
+        mkdir \$LAB_KERNEL_PATH/experimental_release
+        cat <<EOF >\$LAB_KERNEL_PATH/experimental_release/kernel.json
+        {
+         "argv": ["\$LAB_KERNEL_PATH/bin/env.sh", "{connection_file}", "--profile=default"],
+         "display_name": "EBRAINS_experimental_release",
+         "name": "experimental_release",
+         "language": "python"
+        }
+        EOF
+        EOS
+  resource_group: shared-NFS-mount-prod-cscs
+  only:
+    refs:
+      - schedules
+    variables:
+      - $RELEASE == "experimental"
+  allow_failure: false
+
+# Deploy the experimental release of tools (sheduled pipeline)
+# once a week from latest working version of integration release 
+# (branch=experimental_release) to an experimental JupyterLab kernel
+# deploy on the prod environment of the okd prod cluster at JSC
+# runs on protected branches only as the token variable is protected
+deploy-exp-release-prod-jsc:
+  extends: .deploy-build-environment
+  variables:
+    OPENSHIFT_SERVER: $JSC_OPENSHIFT_PROD_SERVER
+    OPENSHIFT_TOKEN: $JSC_OPENSHIFT_PROD_TOKEN
+    INSTALLATION_ROOT: $JSC_INSTALLATION_ROOT_PROD
+    SPACKIFIED_ENV: experimental
+    OP: update
+    BUILD_ENV_DOCKER_IMAGE: $JSC_BUILD_ENV_DOCKER_IMAGE_PROD
+    LAB_KERNEL_PATH: /srv/jupyterlab_kernels/prod/experimental
+    OKD_CLUSTER_UID: $JSC_OKD_PROD_UID
+    #SPACK_ENV_TAR_FILE: ebrains-spack-builds${CI_PIPELINE_ID}.tar.gz
+    SPACK_ENV_TAR_FILE: ebrains-spack-builds.tar.gz
+    OC_PROJECT: jupyterhub
+  before_script:
+    - | 
+        head -n -9 create_JupyterLab_kernel.sh > tmp.txt && mv tmp.txt create_JupyterLab_kernel.sh
+        cat << EOS >> create_JupyterLab_kernel.sh
+        mkdir \$LAB_KERNEL_PATH/experimental_release
+        cat <<EOF >\$LAB_KERNEL_PATH/experimental_release/kernel.json
+        {
+         "argv": ["\$LAB_KERNEL_PATH/bin/env.sh", "{connection_file}", "--profile=default"],
+         "display_name": "EBRAINS_experimental_release",
+         "name": "experimental_release",
+         "language": "python"
+        }
+        EOF
+        EOS
+  resource_group: shared-NFS-mount-prod-jsc
+  only:
+    refs:
+      - schedules
+    variables:
+      - $RELEASE == "experimental"
+  allow_failure: false
--- a/packages/arbor/package.py
+++ b/packages/arbor/package.py
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Arbor(CMakePackage, CudaPackage):
+    """Arbor is a high-performance library for computational neuroscience
+    simulations."""
+
+    homepage = 'https://arbor-sim.org'
+    git      = 'https://github.com/arbor-sim/arbor.git'
+    url      = 'https://github.com/arbor-sim/arbor/releases/download/v0.6/arbor-v0.6-full.tar.gz'
+    maintainers = ['bcumming', 'brenthuisman', 'haampie', 'schmitts']
+
+    version('master', branch='master', submodules=True)
+    version('0.6', sha256='4cd333b18effc8833428ddc0b99e7dc976804771bc85da90034c272c7019e1e8', url='https://github.com/arbor-sim/arbor/releases/download/v0.6/arbor-v0.6-full.tar.gz')
+    version('0.5.2', sha256='290e2ad8ca8050db1791cabb6b431e7c0409c305af31b559e397e26b300a115d', url='https://github.com/arbor-sim/arbor/releases/download/v0.5.2/arbor-v0.5.2-full.tar.gz')
+    version('0.5', sha256='d0c8a4c7f97565d7c30493c66249be794d1dc424de266fc79cecbbf0e313df59', url='https://github.com/arbor-sim/arbor/releases/download/v0.5/arbor-v0.5-full.tar.gz')
+
+    variant('assertions', default=False, description='Enable arb_assert() assertions in code.')
+    variant('doc', default=False, description='Build documentation.')
+    variant('mpi', default=False, description='Enable MPI support')
+    variant('neuroml', default=True, description='Build NeuroML support library.')
+    variant('python', default=True, description='Enable Python frontend support')
+    variant('vectorize', default=False, description='Enable vectorization of computational kernels')
+
+    # https://docs.arbor-sim.org/en/latest/install/build_install.html?highlight=requirements#compilers
+    conflicts('%gcc@:8.3')
+    conflicts('%clang@:7')
+    # Cray compiler v9.2 and later is Clang-based.
+    conflicts('%cce@:9.1')
+    conflicts('%intel')
+
+    depends_on('cmake@3.12:', type='build')
+
+    # misc dependencies
+    depends_on('fmt@7.1:', when='@0.5.3:') # required by the modcc compiler
+    depends_on('nlohmann-json')
+    depends_on('cuda@10:', when='+cuda')
+    depends_on('libxml2', when='+neuroml')
+
+    # mpi
+    depends_on('mpi', when='+mpi')
+    depends_on('py-mpi4py', when='+mpi+python', type=('build', 'run'))
+
+    # python (bindings)
+    extends('python', when='+python')
+    depends_on('python@3.6:', when="+python", type=('build', 'run'))
+    depends_on('py-numpy', when='+python', type=('build', 'run'))
+    depends_on('py-pybind11@2.8.1:', when='+python', type=('build', 'run'))
+
+    # sphinx based documentation
+    depends_on('python@3.6:', when="+doc", type='build')
+    depends_on('py-sphinx', when="+doc", type='build')
+    depends_on('py-svgwrite', when='+doc', type='build')
+
+    @property
+    def build_targets(self):
+        return ['all', 'html'] if '+doc' in self.spec else ['all']
+
+    def cmake_args(self):
+        args = [
+            self.define_from_variant('ARB_WITH_ASSERTIONS', 'assertions'),
+            self.define_from_variant('ARB_WITH_MPI', 'mpi'),
+            self.define_from_variant('ARB_WITH_NEUROML', 'neuroml'),
+            self.define_from_variant('ARB_WITH_PYTHON', 'python'),
+            self.define_from_variant('ARB_VECTORIZE', 'vectorize'),
+        ]
+
+        if '+cuda' in self.spec:
+            args.append('-DARB_GPU=cuda')
+
+        # query spack for the architecture-specific compiler flags set by its wrapper
+        args.append('-DARB_ARCH=none')
+        opt_flags = self.spec.target.optimization_flags(
+            self.spec.compiler.name,
+            self.spec.compiler.version)
+        args.append('-DARB_CXX_FLAGS_TARGET=' + opt_flags)
+
+        return args
--- a/packages/biobb-common/.gitkeep
+++ b/packages/biobb-common/.gitkeep
--- a/packages/biobb-common/package.py
+++ b/packages/biobb-common/package.py
+# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+class BiobbCommon(PythonPackage):
+    """Biobb_common is the base package required to use the biobb packages"""
+
+    # Homepage and download url
+    homepage = "https://github.com/bioexcel/biobb_common"
+    #url = "https://github.com/bioexcel/biobb_common/tarball/v3.7.0"
+    git = 'https://github.com/bioexcel/biobb_common.git'
+
+    # FIXME: Add a list of GitHub accounts to
+    # notify when the package is updated.
+    # maintainers = ['github_user1', 'github_user2']
+
+    # Versions
+    version('3.7.0', branch='master')
+
+    # Dependencies
+    depends_on('py-setuptools')
+    depends_on('python@3.7:', type=('build', 'run'))
+    depends_on('py-pyyaml', type=('build', 'run'))
+    depends_on('py-requests', type=('build', 'run'))
+    depends_on('py-biopython@1.78:1.80', type=('build', 'run'))
--- a/packages/meta-brainscales/package.py
+++ b/packages/meta-brainscales/package.py
@@ -49,7 +49,7 @@ class MetaBrainscales(Package):
    depends_on('py-matplotlib')
    depends_on('py-nose')
    depends_on('py-numpy')
-    depends_on('py-pybind11@2.6.0:2.6.999') # workaround concretization error (py-scipy doesn't like 2.7)
+    depends_on('py-pybind11')
    depends_on('py-pybind11-stubgen')
    depends_on('py-pycodestyle')
    depends_on('py-pyelftools')

--- a/packages/nest/nest-simulator-3.2-p1-VersionNumber.patch
+++ b/packages/nest/nest-simulator-3.2-p1-VersionNumber.patch
+diff --git a/README.md b/README.md
+index 93a4727f2..c8be0e019 100644
+--- a/README.md
+++ b/README.md
+@@ -3,18 +3,18 @@
+ [![Documentation](https://img.shields.io/readthedocs/nest-simulator?logo=readthedocs&logo=Read%20the%20Docs&label=Documentation)](https://nest-simulator.org/documentation)
+ [![CII Best Practices](https://bestpractices.coreinfrastructure.org/projects/2218/badge)](https://bestpractices.coreinfrastructure.org/projects/2218)
+ [![License](http://img.shields.io/:license-GPLv2+-green.svg)](http://www.gnu.org/licenses/gpl-2.0.html)
+-[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4739103.svg)](https://doi.org/10.5281/zenodo.4739103)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5886894.svg)](https://doi.org/10.5281/zenodo.5886894)
+ 
+ [![Latest release](https://img.shields.io/github/release/nest/nest-simulator.svg?color=brightgreen&label=latest%20release)](https://github.com/nest/nest-simulator/releases)
+ [![GitHub contributors](https://img.shields.io/github/contributors/nest/nest-simulator?logo=github)](https://github.com/nest/nest-simulator)
+ [![GitHub commit activity](https://img.shields.io/github/commit-activity/y/nest/nest-simulator?logo=github&color=%23ff6633)](https://github.com/nest/nest-simulator)
+ 
+-[![Ubuntu version](https://img.shields.io/badge/ubuntu-v2.20.0%20(PPA)-blue?logo=debian)](https://nest-simulator.readthedocs.io/en/latest/installation/)
+[![Ubuntu version](https://img.shields.io/badge/ubuntu-(PPA)-blue?logo=debian)](https://nest-simulator.readthedocs.io/en/latest/installation/)
+ [![Fedora package](https://img.shields.io/fedora/v/nest?logo=fedora)](https://src.fedoraproject.org/rpms/nest)
+ [![Conda version](https://img.shields.io/conda/vn/conda-forge/nest-simulator.svg?logo=conda-forge&logoColor=white)](https://anaconda.org/conda-forge/nest-simulator)
+ [![Homebrew version](https://img.shields.io/homebrew/v/nest.svg?logo=apple)](https://formulae.brew.sh/formula/nest)
+-[![Docker Image Version](https://img.shields.io/docker/v/nestsim/nest/2.20.0?label=docker&logo=docker&logoColor=white)](https://hub.docker.com/r/nestsim/nest)
+-[![Virtual applicance](https://img.shields.io/badge/VM-v2.20.0-blue?logo=CodeSandbox)](https://nest-simulator.readthedocs.io/en/latest/download.html#download-livemedia)
+[![Docker Image Version](https://img.shields.io/docker/v/nestsim/nest?label=docker&sort=semver&logo=docker&logoColor=white)](https://hub.docker.com/r/nestsim/nest)
+[![Virtual applicance](https://img.shields.io/badge/VM-v3.1-blue?logo=CodeSandbox)](https://nest-simulator.readthedocs.io/en/latest/download.html#download-livemedia)
+ 
+ [![YouTube Video Views](https://img.shields.io/youtube/views/K7KXmIv6ROY?style=social)](https://www.youtube.com/results?search_query=nest-simulator+neurons)
+ [![Twitter Follow](https://img.shields.io/twitter/follow/nestsimulator?style=social)](https://twitter.com/nestsimulator)
+diff --git a/cmake/NestVersionInfo.cmake b/cmake/NestVersionInfo.cmake
+index 158cd49cf..5efd991e3 100644
+--- a/cmake/NestVersionInfo.cmake
+++ b/cmake/NestVersionInfo.cmake
+@@ -58,7 +58,7 @@ macro(get_version_info)
+     endif()
+ 
+     if (NOT NEST_VERSION_BRANCH)
+-        set(NEST_VERSION_BRANCH "UNKNOWN")
+        set(NEST_VERSION_BRANCH "3.2")
+     endif()
+ 
+     string(SUBSTRING "${NEST_VERSION_BRANCH}" 0 5 isRelease)
+diff --git a/doc/userdoc/release_notes/index.rst b/doc/userdoc/release_notes/index.rst
+index 5c7b46726..44560fe29 100644
+--- a/doc/userdoc/release_notes/index.rst
+++ b/doc/userdoc/release_notes/index.rst
+@@ -10,3 +10,4 @@ transition your simulation code to the new versions.
+ 
+ * :ref:`NEST 3.0 (June 10, 2021 ) <release_3.0>`
+ * :ref:`NEST 3.1 (September 15, 2021 ) <release_3.1>`
+* :ref:`NEST 3.2 (January 21, 2022 ) <release_3.2>`
--- a/packages/nest/package.py
+++ b/packages/nest/package.py
@@ -14,12 +14,21 @@ class Nest(CMakePackage):

    homepage = "http://www.nest-simulator.org"
    urls     = [
-        'https://github.com/nest/nest-simulator/releases/download/v2.12.0/nest-2.12.0.tar.gz',
-        'https://github.com/nest/nest-simulator/archive/v3.0.tar.gz',
+        #
+        # note: for early nest releases the refs/tags/xxx.tar.gz is different
+        # from download/v2.x.y/...tar.gz! The download one already had the
+        # `make dist` boot-strapping done.
+        #
+        #'https://github.com/nest/nest-simulator/releases/download/v2.12.0/nest-2.12.0.tar.gz',
+        'https://github.com/nest/nest-simulator/archive/refs/tags/v2.12.0.tar.gz',
+
+        'https://github.com/nest/nest-simulator/archive/refs/tags/v3.0.tar.gz'
    ]
    git      = "https://github.com/nest/nest-simulator.git"

    version('master', branch='master')
+    version('3.2',    sha256='583d5725882ad5e8fd4fc7ffab425da97cbbb91fadbc327e940c184e8892b958')
+    patch('nest-simulator-3.2-p1-VersionNumber.patch', when='@3.2')
    version('3.1',    sha256='5c11dd6b451c4c6bf93037bf29d5231c6c75a0e1a8863344f6fb9bb225f279ca')
    version('3.0',    sha256='d481ea67f3251fe3aadf5252ab0a999172f0cd5536c5985366d271d772e686e6')
    patch('2021-07-17_fix-pyexecdir.patch', when='@3.0')
@@ -50,6 +59,8 @@ class Nest(CMakePackage):
            description="Enable GNU Scientific Library")
    variant('shared',   default=True,
            description="Build shared libraries")
+    variant('boost',    default=True,
+            description="Enable optimizations provided via Boost library algorithms and containers")
    # TODO add variants for neurosim and music when these are in spack

    conflicts('~gsl', when='@:2.10.99',
@@ -68,6 +79,7 @@ class Nest(CMakePackage):
    depends_on('py-cython@0.19.2:', when='+python', type='build')
    depends_on('py-nose',           when='+python', type='test')
    depends_on('py-setuptools',     when='+python', type='build')
+    depends_on('boost',             when="@2.16:+boost", type='build')
    depends_on('py-setuptools@:44.99.99',     when='@:2.15.99+python', type='build')

    depends_on('mpi', when='+mpi')
@@ -121,10 +133,11 @@ class Nest(CMakePackage):
    def cmake_args(self):
        args = []

-        if '+mpi' in self.spec:
-            args.append('-Dwith-mpi=ON')
-        else:
-            args.append('-Dwith-mpi=OFF')
+        for flag in "boost mpi openmp optimize".split():
+            if '+' + flag in self.spec:
+                args.append('-Dwith-'+flag+'=ON')
+            else:
+                args.append('-Dwith-'+flag+'=OFF')

        if '+gsl' in self.spec:
            args.append('-Dwith-gsl=' + self.spec['gsl'].prefix)
@@ -140,16 +153,6 @@ class Nest(CMakePackage):
                args.append('-Dwith-python=OFF')
                args.append('-Dcythonize-pynest=OFF')

-        if '+optimize' in self.spec:
-            args.append('-Dwith-optimize=ON')
-        else:
-            args.append('-Dwith-optimize=OFF')
-
-        if '+openmp' in self.spec:
-            args.append('-Dwith-openmp=ON')
-        else:
-            args.append('-Dwith-openmp=OFF')
-
        if '+shared' in self.spec:
            args.append('-Dstatic-libraries=OFF')
        else:

--- a/spack.yaml
+++ b/spack.yaml
@@ -2,9 +2,6 @@ spack:
  specs:
    # Base
    - python@3.8.11 %gcc@10.3.0
-    # R
-    - r@4.1.0 %gcc@10.3.0
-    - r-irkernel@1.2 %gcc@10.3.0
    # Notebook
    - py-jupyter %gcc@10.3.0
    - py-ipython %gcc@10.3.0
@@ -20,8 +17,8 @@ spack:
    - py-seaborn %gcc@10.3.0
    - py-matplotlib %gcc@10.3.0
    # EBRAINS simulators
-    - nest@3.0 +python +gsl +mpi %gcc@10.3.0
-    - arbor +mpi ^python@3:3.9 %gcc@10.3.0
+    - nest@3.2 +python +gsl +mpi %gcc@10.3.0
+    - arbor +python +mpi ^python@3:3.9 %gcc@10.3.0
    - neuron +mpi %gcc@10.3.0
    - py-pynn@0.9.6 %gcc@10.3.0
    - tvb-data %gcc@10.3.0
@@ -33,10 +30,11 @@ spack:
    - meta-brainscales %gcc@10.3.0
    - pynn-brainscales@2.0-rc1 ^log4cxx@0.10.0 ^googletest@1.11.0:+gmock %gcc@10.3.0
    #- py-lfpy@2.2.3 %gcc@10.3.0
+    - biobb-common %gcc@10.3.0
    # demo for codejam12
    - funniest1022 %gcc@10.3.0
    # NRP
-    - py-torch~mkldnn~cuda~cudnn~onnx_ml~rocm~tensorpipe~mpi~distributed ^protobuf@:3.17.999 %gcc@10.3.0
+    #- py-torch~mkldnn~cuda~cudnn~onnx_ml~rocm~tensorpipe~mpi~distributed ^protobuf@:3.17.999 %gcc@10.3.0
    # Storage access
    - py-ebrains-drive@0.4.0 %gcc@10.3.0
  concretization: together
--- a/spack_releases_info.txt
+++ b/spack_releases_info.txt
+# release_v0.1_202109
+# release_v0.1_202109_hotfix
+Spack upstream commit sha -> 9853fd50e2dc6253a2c80b38fc3bad8f226ce94e
+"display_name": "EBRAINS_release_v0.1_202109"