Commits · 8641963b97eb5a312124d228665774e2bb56911f · Harry Carey / PyNutil

May 22, 2023
- Create flat to array function · 8641963b
  Sharon Yates authored 1 year ago
  
  8641963b
- cleanup testing_openflatfile.py · f9f2acd2
  Sharon Yates authored 1 year ago
  
  f9f2acd2
- Working with flat files · d7d9d839
  Sharon Yates authored 1 year ago
  
  d7d9d839
May 16, 2023
- Update test1.json · 7202ac4c
  Sharon Yates authored 1 year ago
  
  7202ac4c
- Standardise atlas input and update test jsons · 83448403
  Sharon Yates authored 1 year ago
```
"allenID" changed to idx.
```
  83448403
- Create cvs for allen 2015, 2017, 2022 and WHS v2, v3, v4 · d7e73d7e
  Sharon Yates authored 1 year ago
```
Write and run function for correctly formatted label file
```
  d7e73d7e
May 12, 2023
- Reformat allen and WHS label files · d9f8a7f1
  Sharon Yates authored 1 year ago
```
Write function to reformat label files so they are compatible with PyNutil
```
  d9f8a7f1
- Prep for reading flat files · 1e99ccc9
  Sharon Yates authored 1 year ago
  
  1e99ccc9
- Add label files, reformat label file · ddd51ef9
  Sharon Yates authored 1 year ago
  
  ddd51ef9
May 11, 2023
- Move functions to read_and_write.py · 63073f73
  Sharon Yates authored 1 year ago
  
  63073f73
- Restructure functions into themes py files · 8d8a9e54
  Sharon Yates authored 1 year ago
```
Continued
```
  8d8a9e54
- Create SaveDataframeasCSV function · eb80e04c
  Sharon Yates authored 1 year ago
  
  eb80e04c
- Create PixelCountPerRegion function · eedb4afa
  Sharon Yates authored 1 year ago
  
  eedb4afa
- Cleap up, comments, etc · add3d2c2
  Sharon Yates authored 1 year ago
  
  add3d2c2
May 10, 2023
- Create structure for testing · 6e4ac639
  Sharon Yates authored 1 year ago
  
  6e4ac639
- Reorganise functions into themed py files · 4c1d2dc7
  Sharon Yates authored 1 year ago
  
  4c1d2dc7
- Support for input in json format, continued · 664d0c18
  Sharon Yates authored 1 year ago
  
  664d0c18
May 09, 2023
- Support for input in json formalt · 5dac7235
  Sharon Yates authored 1 year ago
  
  5dac7235
- Restructure and cleanup code, OOP · 9b9862c4
  Sharon Yates authored 1 year ago
  
  9b9862c4
- Delete folder_of_segmentations_to_meshview_sharon_comments.py · ef46b825
  Sharon Yates authored 1 year ago
  
  ef46b825
- Add comments · c510c835
  Sharon Yates authored 1 year ago
  
  c510c835
May 05, 2023
- Integrate multithreaded file · d8c21852
  Sharon Yates authored 1 year ago
  
  d8c21852
- added multithreading demo · 4259be22
  polarbean authored 1 year ago
  
  4259be22
May 04, 2023
- Merge pull request #5 from Neural-Systems-at-UIO/development · bcccdd8b
  Sharon Yates authored 1 year ago
```
Pixel counts per AllenID
```
  bcccdd8b
- Pixel counts per AllenID · 856d0792
  Sharon Yates authored 1 year ago
```
Add time to run
Calculate pixel counts per AllenID
Write to CSV
```
  856d0792
Apr 25, 2023
- restructuring and adding comments · 1474c5fe
  Harry Carey authored 1 year ago
  
  1474c5fe
- restructured package · f48f139b
  Harry Carey authored 1 year ago
  
  f48f139b
- Wrote quick docstrings for all the functions :) · bb9c7c30
  Harry Carey authored 1 year ago
  
  bb9c7c30
- completed the workflow and added a label for outside the atlas · d0dfff74
  Harry Carey authored 1 year ago
  
  d0dfff74
- added a function for easily converting points to region id · 5c8bcfdf
  Harry Carey authored 1 year ago
  
  5c8bcfdf
- renamed main file to pynutil and introduced a workflow example · 3411a3b0
  Harry Carey authored 1 year ago
  
  3411a3b0
- Added test data · 778b42dc
  Harry Carey authored 1 year ago
  
  778b42dc
Apr 21, 2023
- vectorised transform · 9b217492
  polarbean authored 2 years ago
  
  9b217492
- Initial commit · b834c955
  Harry Carey authored 2 years ago
  
  b834c955