Update testing files

test/test8_PyNutil_bigcaudoputamen.json

+{
+  "volume_path": "allen2017",
+  "label_path": "PyNutil/annotation_volumes/allen2017_colours.csv",
+  "segmentation_folder": "PyNutil/test_data/PyTest_seg",
+  "alignment_json": "PyNutil/test_data/PyNutil_testdataset_Nonlin_SY_fixed_bigcaudoputamen.json",
+  "nonlinear": true,
+  "colour": [0, 0, 0],
+  "points_json_path": "PyNutil/outputs/test8_PyNutil.json"
+}

test/test8_PyNutil_fixed.json

-{   "volume_path": "allen2017",
-    "label_path": "PyNutil/annotation_volumes/allen2017_colours.csv",
-    "segmentation_folder": "PyNutil/test_data/PyTest_seg",
-    "alignment_json": "PyNutil/test_data/PyNutil_testdataset_Nonlin_SY_fixed_bigcaudoputamen.json",
-    "nonlinear": true,
-    "colour": [0, 0, 0],
-    "points_json_path": "PyNutil/outputs/test8_PyNutil_use_flat.json"
-}
\ No newline at end of file

testOOP.py

 from PyNutil import PyNutil
 
-pnt = PyNutil(settings_file=r"PyNutil/test/test8_PyNutil_fixed.json")
+pnt = PyNutil(settings_file=r"PyNutil/test/test8_PyNutil_bigcaudoputamen.json")
 ##Use flat can be set to True if you want to use the flat file
 # instead of the visualign json (this is only useful for testing and will be removed)
-pnt.get_coordinates(object_cutoff=0, use_flat=True)
+pnt.get_coordinates(object_cutoff=0, use_flat=False)
 
 pnt.quantify_coordinates()
 
-pnt.save_analysis("PyNutil/outputs/test8_PyNutil_bigcaudoputamen_newatlasmaps")
+pnt.save_analysis("PyNutil/outputs/test8_PyNutil_bigcaudoputamen_noflat")
 
 # remove name, r, g, b, from pixel_
 # add to region_areas df