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Commit efde119e authored by Sharon Christine Yates's avatar Sharon Christine Yates
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Add PyNutil_web test 

Test dataset from data-proxy bucket
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test/test10_PyNutil_web.json 0 → 100644
+ 9
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View file @ efde119e
{
"volume_path": "allen2017",
"label_path": "PyNutil/annotation_volumes/allen2017_colours.csv",
"segmentation_folder": "PyNutil/test_data/PyTest_web",
"alignment_json": "PyNutil/test_data/PyNutil_test.waln",
"nonlinear": true,
"colour": [0, 0, 0],
"points_json_path": "PyNutil/outputs/test.json"
}
testOOP.py
+ 2
− 2
View file @ efde119e
...@@ -2,7 +2,7 @@ from PyNutil import PyNutil ...@@ -2,7 +2,7 @@ from PyNutil import PyNutil
import os import os
os.chdir("..") os.chdir("..")
pnt = PyNutil(settings_file=r"PyNutil/test/test9_PyNutil_linear_only.json") pnt = PyNutil(settings_file=r"PyNutil/test/test10_PyNutil_web.json")
##Use flat can be set to True if you want to use the flat file ##Use flat can be set to True if you want to use the flat file
# instead of the visualign json (this is only useful for testing and will be removed) # instead of the visualign json (this is only useful for testing and will be removed)
...@@ -10,7 +10,7 @@ pnt.get_coordinates(object_cutoff=0, use_flat=False) ...@@ -10,7 +10,7 @@ pnt.get_coordinates(object_cutoff=0, use_flat=False)
pnt.quantify_coordinates() pnt.quantify_coordinates()
pnt.save_analysis("PyNutil/outputs/test9_PyNutil_linear_noflat_fix") pnt.save_analysis("PyNutil/outputs/test10_PyNutil_web")
# remove name, r, g, b, from pixel_ # remove name, r, g, b, from pixel_
# add to region_areas df # add to region_areas df
......
test_data/PyNutil_test.json 0 → 100644
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test_data/PyNutil_test.waln 0 → 100644
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− 0
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test_data/PyTest_web/segmentations/test_s001.dzip 0 → 100644
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test_data/PyTest_web/segmentations/test_s002.dzip 0 → 100644
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test_data/PyTest_web/segmentations/test_s003.dzip 0 → 100644
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test_data/PyTest_web/segmentations/test_s004.dzip 0 → 100644
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test_data/PyTest_web/segmentations/test_s005.dzip 0 → 100644
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