Merge pull request #54 from Neural-Systems-at-UIO/per_hemisphere
finalise per hemi, add tests and documentation
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- PyNutil/io/atlas_loader.py 13 additions, 8 deletionsPyNutil/io/atlas_loader.py
- PyNutil/io/file_operations.py 20 additions, 2 deletionsPyNutil/io/file_operations.py
- PyNutil/io/read_and_write.py 18 additions, 7 deletionsPyNutil/io/read_and_write.py
- PyNutil/main.py 20 additions, 5 deletionsPyNutil/main.py
- PyNutil/processing/coordinate_extraction.py 87 additions, 60 deletionsPyNutil/processing/coordinate_extraction.py
- PyNutil/processing/counting_and_load.py 371 additions, 85 deletionsPyNutil/processing/counting_and_load.py
- PyNutil/processing/data_analysis.py 98 additions, 31 deletionsPyNutil/processing/data_analysis.py
- PyNutil/processing/utils.py 15 additions, 6 deletionsPyNutil/processing/utils.py
- README.md 23 additions, 0 deletionsREADME.md
- demos/basic_example.py 6 additions, 2 deletionsdemos/basic_example.py
- demos/basic_example_custom_atlas.py 7 additions, 7 deletionsdemos/basic_example_custom_atlas.py
- tests/expected_outputs/brainglobe_atlas/per_section_meshview/left_hemisphere_test_s001_centroids.json 1 addition, 0 deletions...section_meshview/left_hemisphere_test_s001_centroids.json
- tests/expected_outputs/brainglobe_atlas/per_section_meshview/left_hemisphere_test_s001_centroids.json:Zone.Identifier 0 additions, 0 deletions.../left_hemisphere_test_s001_centroids.json:Zone.Identifier
- tests/expected_outputs/brainglobe_atlas/per_section_meshview/left_hemisphere_test_s001_pixels.json 1 addition, 0 deletions...er_section_meshview/left_hemisphere_test_s001_pixels.json
- tests/expected_outputs/brainglobe_atlas/per_section_meshview/left_hemisphere_test_s001_pixels.json:Zone.Identifier 0 additions, 0 deletions...iew/left_hemisphere_test_s001_pixels.json:Zone.Identifier
- tests/expected_outputs/brainglobe_atlas/per_section_meshview/left_hemisphere_test_s002_centroids.json 1 addition, 0 deletions...section_meshview/left_hemisphere_test_s002_centroids.json
- tests/expected_outputs/brainglobe_atlas/per_section_meshview/left_hemisphere_test_s002_centroids.json:Zone.Identifier 0 additions, 0 deletions.../left_hemisphere_test_s002_centroids.json:Zone.Identifier
- tests/expected_outputs/brainglobe_atlas/per_section_meshview/left_hemisphere_test_s002_pixels.json 1 addition, 0 deletions...er_section_meshview/left_hemisphere_test_s002_pixels.json
- tests/expected_outputs/brainglobe_atlas/per_section_meshview/left_hemisphere_test_s002_pixels.json:Zone.Identifier 0 additions, 0 deletions...iew/left_hemisphere_test_s002_pixels.json:Zone.Identifier
- tests/expected_outputs/brainglobe_atlas/per_section_meshview/left_hemisphere_test_s003_centroids.json 1 addition, 0 deletions...section_meshview/left_hemisphere_test_s003_centroids.json
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