Skip to content
Snippets Groups Projects
Unverified Commit 28b927cd authored by Harry Carey's avatar Harry Carey Committed by GitHub
Browse files

mention negative section_thickness as per #43

This is a temporary fix until we implement something more substantive
parent 47bd8a3e
No related branches found
No related tags found
No related merge requests found
Pipeline #25313 failed with stages
in 0 seconds
......@@ -121,7 +121,8 @@ Model.propagate_angles()
#To reorder your sections according to the section numbers
Model.enforce_index_order()
#alternatively if you know the precise spacing (ie; 1, 2, 4, indicates that section 3 has been left out of the series) Then you can use
#Furthermore if you know the exact section thickness in microns this can be included instead of None
#Furthermore if you know the exact section thickness in microns this can be included instead of None
#if your sections are numbered rostral to caudal you will need to specify a negative section_thickness
Model.enforce_index_spacing(section_thickness = None)
#now we save which will produce a json file which can be placed in the same directory as your images and then opened with QuickNII.
Model.save_predictions(folderpath + 'MyResults')
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment