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Harry Carey
DeepSlice
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28b927cd
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28b927cd
authored
1 year ago
by
Harry Carey
Committed by
GitHub
1 year ago
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mention negative section_thickness as per #43
This is a temporary fix until we implement something more substantive
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@@ -121,7 +121,8 @@ Model.propagate_angles()
#To reorder your sections according to the section numbers
Model
.
enforce_index_order
()
#alternatively if you know the precise spacing (ie; 1, 2, 4, indicates that section 3 has been left out of the series) Then you can use
#Furthermore if you know the exact section thickness in microns this can be included instead of None
#Furthermore if you know the exact section thickness in microns this can be included instead of None
#if your sections are numbered rostral to caudal you will need to specify a negative section_thickness
Model
.
enforce_index_spacing
(
section_thickness
=
None
)
#now we save which will produce a json file which can be placed in the same directory as your images and then opened with QuickNII.
Model
.
save_predictions
(
folderpath
+
'
MyResults
'
)
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