Merge branch 'fix-py-astropy' into 'master'

update py-astropy to 5.1

See merge request technical-coordination/project-internal/devops/platform/ebrains-spack-builds!443

packages/py-astropy/package.py

+# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+import os
+
+from spack.package import *
+
+
+class PyAstropy(PythonPackage):
+    """The Astropy Project is a community effort to develop a single core
+    package for Astronomy in Python and foster interoperability between
+    Python astronomy packages."""
+
+    homepage = "https://astropy.org/"
+    pypi = "astropy/astropy-4.0.1.post1.tar.gz"
+
+    version("5.1", sha256="1db1b2c7eddfc773ca66fa33bd07b25d5b9c3b5eee2b934e0ca277fa5b1b7b7e")
+    version(
+        "4.0.1.post1", sha256="5c304a6c1845ca426e7bc319412b0363fccb4928cb4ba59298acd1918eec44b5"
+    )
+    version("3.2.1", sha256="706c0457789c78285e5464a5a336f5f0b058d646d60f4e5f5ba1f7d5bf424b28")
+    version("2.0.14", sha256="618807068609a4d8aeb403a07624e9984f566adc0dc0f5d6b477c3658f31aeb6")
+    version("1.1.2", sha256="6f0d84cd7dfb304bb437dda666406a1d42208c16204043bc920308ff8ffdfad1")
+    version("1.1.post1", sha256="64427ec132620aeb038e4d8df94d6c30df4cc8b1c42a6d8c5b09907a31566a21")
+
+    variant("extras", default=False, description="Enable extra functionality")
+
+    # Required dependencies
+    depends_on("python@3.8:", when="@5.1:", type=("build", "run"))
+    depends_on("python@3.6:", when="@4.0:", type=("build", "run"))
+    depends_on("python@3.5:", when="@3.0:", type=("build", "run"))
+    depends_on("python@2.7:2.8,3.4:", when="@2.0:", type=("build", "run"))
+    depends_on("python@2.7:2.8,3.3:", when="@1.2:", type=("build", "run"))
+    depends_on("python@2.6:", type=("build", "run"))
+    depends_on("py-setuptools", type="build")
+    depends_on("py-cython@0.29.13:", type="build")
+    depends_on("py-numpy@1.18:", when="@5.1:", type=("build", "run"))
+    depends_on("py-numpy@1.16:", when="@4.0:", type=("build", "run"))
+    depends_on("py-numpy@1.13:", when="@3.1:", type=("build", "run"))
+    depends_on("py-numpy@1.10:", when="@3.0:", type=("build", "run"))
+    depends_on("py-numpy@1.9:", when="@2.0:", type=("build", "run"))
+    depends_on("py-numpy@1.7:", when="@1.2:", type=("build", "run"))
+    depends_on("py-numpy", type=("build", "run"))
+    depends_on("py-packaging@19.0:", when="@5.1:", type=("build", "run"))
+    depends_on("py-pyyaml@3.13:", when="@5.1:", type=("build", "run"))
+    depends_on("py-pyerfa@2.0:", when="@5.1:", type=("build", "run"))
+    depends_on("py-setuptools-scm@6.2:", when="@5.1:", type="build")
+    depends_on("py-cython@0.29.30:", when="@5.1:", type="build")
+    depends_on("py-extension-helpers", when="@5.1:", type="build")
+    depends_on("pkgconfig", type="build")
+
+    # Optional dependencies
+    depends_on("py-scipy@0.18:", when="+extras", type=("build", "run"))
+    depends_on("py-h5py", when="+extras", type=("build", "run"))
+    depends_on("py-beautifulsoup4", when="+extras", type=("build", "run"))
+    depends_on("py-html5lib", when="+extras", type=("build", "run"))
+    depends_on("py-bleach", when="+extras", type=("build", "run"))
+    depends_on("py-pyyaml", when="+extras", type=("build", "run"))
+    depends_on("py-pandas", when="+extras", type=("build", "run"))
+    depends_on("py-bintrees", when="+extras", type=("build", "run"))
+    depends_on("py-sortedcontainers", when="+extras", type=("build", "run"))
+    depends_on("py-pytz", when="+extras", type=("build", "run"))
+    depends_on("py-jplephem", when="+extras", type=("build", "run"))
+    depends_on("py-matplotlib@2.0:", when="+extras", type=("build", "run"))
+    depends_on("py-scikit-image", when="+extras", type=("build", "run"))
+    depends_on("py-mpmath", when="+extras", type=("build", "run"))
+    depends_on("py-asdf@2.3:", when="+extras", type=("build", "run"))
+    depends_on("py-bottleneck", when="+extras", type=("build", "run"))
+    depends_on("py-pytest", when="+extras", type=("build", "run"))
+
+    # System dependencies
+    depends_on("erfa")
+    depends_on("wcslib")
+    depends_on("cfitsio@:3")
+    depends_on("expat")
+
+    def patch(self):
+        # forces the rebuild of files with cython
+        # avoids issues with PyCode_New() in newer
+        # versions of python in the distributed
+        # cython-ized files
+        if os.path.exists("astropy/cython_version.py"):
+            os.remove("astropy/cython_version.py")
+
+    def install_options(self, spec, prefix):
+        args = [
+            "--use-system-libraries",
+            "--use-system-erfa",
+            "--use-system-wcslib",
+            "--use-system-cfitsio",
+            "--use-system-expat",
+        ]
+
+        return args
+
+    @run_after("install")
+    @on_package_attributes(run_tests=True)
+    def install_test(self):
+        with working_dir("spack-test", create=True):
+            python("-c", "import astropy; astropy.test()")