Merge branch 'add-r-workflow' into 'master'

Add r UQ workflow metapackage

See merge request technical-coordination/project-internal/devops/platform/ebrains-spack-builds!270

packages/r-rgsl/package.py

+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+
 from spack.package import *
 
+
 class RRgsl(RPackage):
     """This is an interface package to solve ODE systems using gsl_odeiv2 within R. The system to solve has to be defined using C code: a shared library, dynamically loaded by this package when solving."""
 
     homepage = "https://github.com/icpm-kth/rgsl"
     url = "https://github.com/icpm-kth/rgsl/archive/refs/tags/v0.1.tar.gz"
+
     version("0.1", sha256="dd6a14dda8731f4cf32149c8a9842e4e2ba424c8404f4d6839108153b20e4c3e")
 
     # GNU Scientific Library: https://www.gnu.org/software/gsl

packages/r-sbtabvfgen/package.py

@@ -3,22 +3,6 @@
 #
 # SPDX-License-Identifier: (Apache-2.0 OR MIT)
 
-# ----------------------------------------------------------------------------
-# If you submit this package back to Spack as a pull request,
-# please first remove this boilerplate and all FIXME comments.
-#
-# This is a template package file for Spack.  We've put "FIXME"
-# next to all the things you'll want to change. Once you've handled
-# them, you can save this file and test your package like this:
-#
-#     spack install r-sbtabvfgen
-#
-# You can edit this file again by typing:
-#
-#     spack edit r-sbtabvfgen
-#
-# See the Spack documentation for more information on packaging.
-# ----------------------------------------------------------------------------
 
 from spack.package import *
 

packages/r-vinecopula/package.py

+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+
+from spack import *
+
+
+class RVinecopula(RPackage):
+    """Provides tools for the statistical analysis of regular vine copula models."""
+
+    homepage = "https://cran.r-project.org/package=VineCopula"
+    cran     = "VineCopula"
+
+    version('2.4.5', sha256='06b9f67d14d525cbf04c991cedbd2e4f58bbb1f24ec10947aeed1efef91c33cd')
+    version('2.4.4', sha256='8449b1181fd7f325a2f0539cdaa4a4ff895c41424f462f52258729436078c90a')
+    version('2.4.3', sha256='42727aa7345ab544242182222eb97476f5dc04bc837f94f6fd3ea6ccac93ea17')
+    version('2.4.2', sha256='468a4aa80feaa8b285ba596430b963b2f9f5e1f64254dcd63baf2fb0059e9a90')
+    version('2.4.1', sha256='b19640d91a0d6608355c6fe9a32c0d1bc6c1993047cba440617d07b5b389de30')
+
+    depends_on('r-mass', type=('build', 'run'))
+    depends_on('r-mvtnorm', type=('build', 'run'))
+    depends_on('r-adgoftest', type=('build', 'run'))
+    depends_on('r-lattice', type=('build', 'run'))

packages/wf-uq-akar4/package.py

+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+
+from spack import *
+
+
+class WfUqAkar4(BundlePackage):
+    """Meta-package to collect all dependencies of the Uncertainty Quantification demo."""
+
+    homepage="https://wiki.ebrains.eu/bin/view/Collabs/subcellular-modeling-and-simulation/Lab"
+
+    version("0.1")
+
+    depends_on("r-mass")
+    depends_on("r-desolve")
+    depends_on("r-pracma")
+    depends_on("r-ks")
+    depends_on("r-reshape2")
+    depends_on("r-r-utils")
+    depends_on("r-vinecopula")

spack.yaml

@@ -67,6 +67,7 @@ spack:
     - sda
     - r-rgsl
     - r-sbtabvfgen
+    - wf-uq-akar4
     # demo for codejam12
     #- funniest1022
   concretizer: