Merge branch 'master' into 'add-r-workflow'

update branch

See merge request technical-coordination/project-internal/devops/platform/ebrains-spack-builds!269

packages/r-rgsl/package.py

+from spack.package import *
+
+class RRgsl(RPackage):
+    """This is an interface package to solve ODE systems using gsl_odeiv2 within R. The system to solve has to be defined using C code: a shared library, dynamically loaded by this package when solving."""
+
+    homepage = "https://github.com/icpm-kth/rgsl"
+    url = "https://github.com/icpm-kth/rgsl/archive/refs/tags/v0.1.tar.gz"
+    version("0.1", sha256="dd6a14dda8731f4cf32149c8a9842e4e2ba424c8404f4d6839108153b20e4c3e")
+
+    # GNU Scientific Library: https://www.gnu.org/software/gsl
+    # spack: https://spack.readthedocs.io/en/latest/package_list.html#gsl
+    depends_on("gsl")

packages/r-sbtabvfgen/package.py

+# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+# ----------------------------------------------------------------------------
+# If you submit this package back to Spack as a pull request,
+# please first remove this boilerplate and all FIXME comments.
+#
+# This is a template package file for Spack.  We've put "FIXME"
+# next to all the things you'll want to change. Once you've handled
+# them, you can save this file and test your package like this:
+#
+#     spack install r-sbtabvfgen
+#
+# You can edit this file again by typing:
+#
+#     spack edit r-sbtabvfgen
+#
+# See the Spack documentation for more information on packaging.
+# ----------------------------------------------------------------------------
+
+from spack.package import *
+
+
+class RSbtabvfgen(RPackage):
+    """This package converts SBtab files (with one table per tsv file) into three other formats: vfgen, sbml, Neuron's MOD. It also saves its findings in a free form, as text files. SBtab files typically contain a reaction network model (systems biology). The output is more useful for simulations."""
+
+    homepage = "https://github.com/icpm-kth/SBtabVFGEN"
+    url = "https://github.com/icpm-kth/SBtabVFGEN/archive/refs/tags/v0.1.tar.gz"
+
+    version("0.1", sha256="499c51abee75ca5961a41608c9fb09ad523e12aae276f5f67bffa313244cff28")
+
+    depends_on("r-pracma")

spack.yaml

@@ -65,6 +65,8 @@ spack:
     - apbs
     - py-pdb2pqr
     - sda
+    - r-rgsl
+    - r-sbtabvfgen
     # demo for codejam12
     #- funniest1022
   concretizer: