Update .gitlab-ci.yml

.gitlab-ci.yml

@@ -223,8 +223,8 @@ sync-gitlab-spack-instance:
     - |
       if [ ! -d $SPACK_PATH ]; then
         git clone --depth 1 -c advice.detachedHead=false -c feature.manyFiles=true --branch $SPACK_VERSION https://github.com/spack/spack $SPACK_PATH
-        cp $CI_PROJECT_DIR/packages.yaml $SPACK_PATH/etc/spack/packages.yaml
       fi
+    - cp $CI_PROJECT_DIR/packages.yaml $SPACK_PATH/etc/spack/packages.yaml
     - . $SPACK_PATH/share/spack/setup-env.sh
     # - spack bootstrap untrust github-actions
     - spack compiler find
@@ -235,7 +235,7 @@ sync-gitlab-spack-instance:
     - spack compiler list
     - spack install --keep-stage python@3.8.11 %gcc@10.3.0
     # - for section in $(spack config list); do spack config blame $section; done
-    - mkdir -p $SPACK_REPO_PATH && cp -r -t $SPACK_REPO_PATH $CI_PROJECT_DIR/{packages,repo.yaml}
+    - rm -rf $SPACK_REPO_PATH && mkdir $SPACK_REPO_PATH && cp -r -t $SPACK_REPO_PATH $CI_PROJECT_DIR/{packages,repo.yaml}
     - spack repo list | grep -q ebrains-spack-builds && echo "Repository registered already" || spack repo add $SPACK_REPO_PATH
     - spack repo list
     - spack env list | grep -q $SPACK_NFS_ENV && echo "Environment created already" || spack env create $SPACK_NFS_ENV $CI_PROJECT_DIR/spack.yaml