Now a pathology has a version until Exareme is completely replaced by…

Now a pathology has a version until Exareme is completely replaced by Exareme2 the portalbackend will ignore the version for the algorithms that run on Exareme.

Filters about datasets and columns are now moved to the MIP-Engine

Removed unneccesary shell scripts.

Dev/automated build and push actions

The DOCKERFILE uses new mvn and jdk images and has no dependencies on HBPMedical repos.
Removed many unused old files.
Removed docker specific folder.

Added miliseconds in ExperimentDAO toString.

Dev/mip 581/provide experiment UUID to mipengine request

1) Added logs when an internal exception occurs.
2) Made 'x' inputdata optional just like 'y'.
3) 'pathology' renamed to 'data_model' for mipengine.

MIP-Engine expected response is not validated, only forwarded.

Added migration script

Added migration script to set status to error when the result contains the error types text/plain+error, text/plain+warning, text/plain+user_error

An experiment wont any longer display the username but the whole info about the user

Update V7_1__NewExperimentResultFormat.sql

Cherry pick updated migration script 7.1

Dev/mip 210/mip engine status code

1) Even if the experiment result is 400-500 the result is stored
2) Cleaned and renamed variables/methods.

Fix/519 workflow tab throws access denied

Dev/mip 62/mip engine integration with the mip portalbackend

Accordingly named classes with proper prefix, seperated  GalaxyService from main service, replaced @Setter @Getter with @Data, instead of converters created constructors for each class so its better organized, functions that were accessing database were moved to the according repository