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HBP Medical Informatics Platform
portal-backend
Commits
cb911230
Commit
cb911230
authored
9 years ago
by
Mirco Nasuti
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Bugfix : Filter should not be used
parent
b7f59019
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src/main/java/org/hbp/mip/utils/CSVUtil.java
+9
-124
9 additions, 124 deletions
src/main/java/org/hbp/mip/utils/CSVUtil.java
with
9 additions
and
124 deletions
src/main/java/org/hbp/mip/utils/CSVUtil.java
+
9
−
124
View file @
cb911230
package
org.hbp.mip.utils
;
import
org.hbp.mip.model.Dataset
;
import
org.hbp.mip.model.Filter
;
import
org.hbp.mip.model.Query
;
import
org.hbp.mip.model.Variable
;
import
org.hibernate.Session
;
import
java.io.*
;
import
java.io.BufferedReader
;
import
java.io.IOException
;
import
java.io.InputStream
;
import
java.io.InputStreamReader
;
import
java.util.*
;
import
java.util.regex.Matcher
;
import
java.util.regex.Pattern
;
...
...
@@ -21,7 +23,7 @@ public class CSVUtil {
public
static
Dataset
parseValues
(
String
filename
,
Query
query
)
{
List
<
String
[]>
rows
=
get
Filtered
Rows
(
filename
,
query
.
getFilters
()
);
List
<
String
[]>
rows
=
getRows
(
filename
);
Dataset
result
=
new
Dataset
();
String
code
=
GenerateDSCode
(
query
);
...
...
@@ -138,8 +140,8 @@ public class CSVUtil {
return
result
;
}
private
static
List
<
String
[]>
get
Filtered
Rows
(
String
filename
,
List
<
Filter
>
filters
)
{
List
<
String
[]>
filteredR
ows
=
new
LinkedList
<>();
private
static
List
<
String
[]>
getRows
(
String
filename
)
{
List
<
String
[]>
r
ows
=
new
LinkedList
<>();
try
{
InputStream
is
=
Dataset
.
class
.
getClassLoader
().
getResourceAsStream
(
filename
);
InputStreamReader
isr
=
new
InputStreamReader
(
is
);
...
...
@@ -147,9 +149,7 @@ public class CSVUtil {
String
[]
firstRow
=
br
.
readLine
().
split
(
SEPARATOR
,
-
1
);
// 1st row -> headers
for
(
String
line
=
br
.
readLine
();
line
!=
null
;
line
=
br
.
readLine
())
{
String
[]
row
=
line
.
split
(
SEPARATOR
,
-
1
);
if
(
matchFilter
(
row
,
filters
,
firstRow
))
{
filteredRows
.
add
(
row
);
}
rows
.
add
(
row
);
}
br
.
close
();
isr
.
close
();
...
...
@@ -158,7 +158,7 @@ public class CSVUtil {
e
.
printStackTrace
();
}
return
filteredR
ows
;
return
r
ows
;
}
private
static
int
find
(
String
code
,
String
[]
firstRow
)
{
...
...
@@ -169,121 +169,6 @@ public class CSVUtil {
return
-
1
;
}
private
static
boolean
matchFilter
(
String
[]
row
,
List
<
Filter
>
filters
,
String
[]
firstRow
)
{
int
nbPassed
=
0
;
boolean
temp
;
for
(
Filter
f
:
filters
)
{
int
idx
=
find
(
f
.
getVariable
().
getCode
(),
firstRow
);
String
op
=
f
.
getOperator
();
List
<
String
>
testValues
=
f
.
getValues
();
temp
=
false
;
switch
(
op
)
{
case
"eq"
:
for
(
String
t
:
testValues
)
{
if
(
t
.
equals
(
row
[
idx
]))
{
temp
=
true
;
}
}
if
(
temp
)
nbPassed
++;
break
;
case
"lt"
:
{
double
r
=
Double
.
parseDouble
(
row
[
idx
]);
for
(
String
t
:
testValues
)
{
double
d
=
Double
.
parseDouble
(
t
);
if
(
r
<
d
)
{
temp
=
true
;
}
}
if
(
temp
)
nbPassed
++;
break
;
}
case
"gt"
:
{
double
r
=
Double
.
parseDouble
(
row
[
idx
]);
for
(
String
t
:
testValues
)
{
double
d
=
Double
.
parseDouble
(
t
);
if
(
r
>
d
)
{
temp
=
true
;
}
}
if
(
temp
)
nbPassed
++;
break
;
}
case
"gte"
:
{
double
r
=
Double
.
parseDouble
(
row
[
idx
]);
for
(
String
t
:
testValues
)
{
double
d
=
Double
.
parseDouble
(
t
);
if
(
r
>=
d
)
{
temp
=
true
;
}
}
if
(
temp
)
nbPassed
++;
break
;
}
case
"lte"
:
{
double
r
=
Double
.
parseDouble
(
row
[
idx
]);
for
(
String
t
:
testValues
)
{
double
d
=
Double
.
parseDouble
(
t
);
if
(
r
<=
d
)
{
temp
=
true
;
}
}
if
(
temp
)
nbPassed
++;
break
;
}
case
"neq"
:
for
(
String
t
:
testValues
)
{
if
(!
t
.
equals
(
row
[
idx
]))
{
temp
=
true
;
}
}
if
(
temp
)
nbPassed
++;
break
;
case
"in"
:
for
(
String
t
:
testValues
)
{
if
(
t
.
equals
(
row
[
idx
]))
{
temp
=
true
;
}
}
if
(
temp
)
nbPassed
++;
break
;
case
"notin"
:
for
(
String
t
:
testValues
)
{
if
(!
t
.
equals
(
row
[
idx
]))
{
temp
=
true
;
}
}
if
(
temp
)
nbPassed
++;
break
;
case
"between"
:
{
double
r
=
Double
.
parseDouble
(
row
[
idx
]);
if
(
testValues
.
size
()
==
2
)
{
double
min
=
Double
.
parseDouble
(
testValues
.
get
(
0
));
double
max
=
Double
.
parseDouble
(
testValues
.
get
(
1
));
if
(
r
>=
min
&&
r
<=
max
)
{
temp
=
true
;
}
}
if
(
temp
)
nbPassed
++;
break
;
}
}
}
return
nbPassed
==
filters
.
size
();
}
private
static
String
GenerateDSCode
(
Query
query
)
{
String
prefix
=
"DS"
;
String
queryStr
=
Integer
.
toString
(
query
.
hashCode
());
...
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