removed files containing private data and should only be used in development environment

build.sh

-#!/usr/bin/env bash
-
-./halt.sh
-docker-compose -f ./docker-compose_build.yml build
-docker-compose -f ./docker-compose_build.yml run --rm portal-backend-build

captain_run.sh

-#!/usr/bin/env bash
-
-if [ $(docker ps | grep portal-db | wc -l) -gt 0 ]; then
-  docker kill portal-db
-fi
-if [ $(docker ps -a | grep portal-db | wc -l) -gt 0 ]; then
-  docker rm -f portal-db
-fi
-
-if [ $(docker ps | grep portal-backend | wc -l) -gt 0 ]; then
-  docker kill portal-backend
-fi
-if [ $(docker ps -a | grep portal-backend | wc -l) -gt 0 ]; then
-  docker rm -f portal-backend
-fi
-
-docker run --name portal-db -p 5432:5432 -e POSTGRES_USER=postgres -d postgres
-
-echo "Waiting for DB to start..."
-until [ $(docker exec portal-db psql -U postgres -c "\q" 2>&1 | wc -l) -eq 0 ]; do
-    printf '.'
-    sleep 1
-done
-
-docker run --name portal-backend -p 8080:8080 \
--e "AUTHENTICATION=1" \
--e "CLIENT_SECRET=aD0Tueb3KkNkcZqZgQbNyDWgnM95IfZ0xPCQ_6Z9dQNHXY00RIrnAD_m7sNJh1oofYSX8aHkl72MkwI0K626Ug" \
--e "FRONTEND_REDIRECT_URL=http://localhost/home" \
--d hbpmip/portal-backend
-
-echo "Waiting for backend to start..."
-until [ $(docker logs portal-backend | grep "Started MIPApplication" | wc -l) -eq 1 ]; do
-    printf '.'
-    sleep 1
-done

clean.sh

-#!/usr/bin/env bash
-
-./halt.sh
-sudo rm -rf ./.m2/
-sudo rm -rf ./target/
-sudo rm -rf ./pgdata/
\ No newline at end of file

config/application.yml

-# Configuration template for the portal running inside a Docker container
-
-spring:
-  datasource:
-    url: jdbc:postgresql://172.22.0.1:5432/postgres
-    username: postgres
-    password: pass
-    driver-class-name: org.postgresql.Driver
-  jpa:
-    hibernate:
-      dialect: org.hibernate.dialect.PostgreSQL9Dialect
-  resources:
-      chain:
-        enabled: true
-
-security:
-  enabled: false
-
-hbp:
-  client:
-    clientId: 996f97c5-a3ca-460e-b18b-00df3e2be89a
-    clientSecret: aD0Tueb3KkNkcZqZgQbNyDWgnM95IfZ0xPCQ_6Z9dQNHXY00RIrnAD_m7sNJh1oofYSX8aHkl72MkwI0K626Ug
-    accessTokenUri: https://services.humanbrainproject.eu/oidc/token
-    userAuthorizationUri: https://services.humanbrainproject.eu/oidc/authorize
-    tokenName: oauth_token
-    authenticationScheme: query
-    clientAuthenticationScheme: form
-  resource:
-    userInfoUri: https://services.humanbrainproject.eu/oidc/userinfo
-
-logging:
-  level:
-    org.springframework.security: DEBUG
-
-server:
-  contextPath: /services
-  port: 8080
-  use-forward-headers: true
-  session:
-    timeout: 2592000
-
-workflow:
-  experimentUrl: http://172.22.0.1:8087/experiment
-  listMethodsUrl: http://172.22.0.1:8087/list-methods
-  miningMipUrl: http://172.22.0.1:8087/mining
-  miningExaremeUrl: http://hbps2.chuv.ch:9090/mining/query
-
-frontend:
-  redirect:
-    url: http://frontend/home
-
-authentication:
-  enabled: 0

docker-compose.yml

-version: '2'
-
-services:
-  portal-backend:
-    container_name: portal-backend
-    build:
-      context: .
-      dockerfile: ./src/docker/run/Dockerfile
-    depends_on:
-      - "portal-db"
-    ports:
-      - "8080:8080"
-    links:
-      - "portal-db"
-    environment:
-      DB_URL: jdbc:postgresql://portal-db:5432/postgres
-      DB_USER: postgres
-      DB_PASS: pass
-      CLIENT_ID: 996f97c5-a3ca-460e-b18b-00df3e2be89a
-      CLIENT_SECRET: aD0Tueb3KkNkcZqZgQbNyDWgnM95IfZ0xPCQ_6Z9dQNHXY00RIrnAD_m7sNJh1oofYSX8aHkl72MkwI0K626Ug
-      TOKEN_URI: https://services.humanbrainproject.eu/oidc/token
-      AUTH_URI: https://services.humanbrainproject.eu/oidc/authorize
-      USER_INFO_URI: https://services.humanbrainproject.eu/oidc/userinfo
-      LOGGING_LEVEL: DEBUG
-      CONTEXT_PATH: /services
-      PORT: 8080
-      SESSION_TIMEOUT: 2592000
-      EXPERIMENT_URL: http://backend-ml:8087/experiment
-      LIST_METHODS_URL: http://backend-ml:8087/list-methods
-      ML_URL: http://172.22.0.1:8087/mining
-      EXAREME_URL: http://hbps2.chuv.ch:9090/mining/query
-      FRONTEND_REDIRECT_URL: http://frontend/home
-      AUTHENTICATION: 1
-
-  portal-db:
-    container_name: portal-db
-    image: postgres:9.5.3
-    ports:
-      - "5432:5432"
-    volumes:
-      - ./pgdata:/var/lib/postgresql/data/pgdata
-    environment:
-      POSTGRES_USER: postgres
-      PGDATA: /var/lib/postgresql/data/pgdata

docker-compose_build.yml

-version: '2'
-
-services:
-  portal-backend-build:
-    container_name: portal-backend-build
-    build: ./src/docker/build/
-    volumes:
-      - ./:/opt/portal/
-      - .m2:/root/.m2/
-    ports:
-      - "8080:8080"

go.sh

-#!/usr/bin/env bash
-
-./build.sh
-./run.sh

halt.sh

-#!/usr/bin/env bash
-
-docker-compose kill
-docker-compose rm -f

log.sh

-#!/usr/bin/env bash
-
-docker-compose logs -f backend

run.sh

-#!/usr/bin/env bash
-
-docker-compose build
-docker-compose up -d portal-db
-
-echo "Waiting for database to be ready..."
-until [ $(docker-compose exec portal-db psql -U postgres -c "\q" 2>&1 | wc -l) -eq 0 ]; do
-    printf '.'
-    sleep 1
-done
-
-docker-compose up -d portal-backend