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HBP Medical Informatics Platform
portal-backend
Commits
3a91d3a9
Commit
3a91d3a9
authored
7 years ago
by
Ludovic Claude
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Use a future to collect results of experiments
parent
1814f265
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Changes
2
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2 changed files
src/main/java/eu/hbp/mip/akka/WokenClientController.java
+7
-2
7 additions, 2 deletions
src/main/java/eu/hbp/mip/akka/WokenClientController.java
src/main/java/eu/hbp/mip/controllers/ExperimentApi.java
+31
-8
31 additions, 8 deletions
src/main/java/eu/hbp/mip/controllers/ExperimentApi.java
with
38 additions
and
10 deletions
src/main/java/eu/hbp/mip/akka/WokenClientController.java
+
7
−
2
View file @
3a91d3a9
...
...
@@ -16,6 +16,7 @@ import org.springframework.beans.factory.annotation.Value;
import
org.springframework.http.HttpStatus
;
import
org.springframework.http.ResponseEntity
;
import
scala.concurrent.Await
;
import
scala.concurrent.ExecutionContext
;
import
scala.concurrent.Future
;
import
scala.concurrent.duration.Duration
;
...
...
@@ -92,16 +93,20 @@ public abstract class WokenClientController {
return
handleResponse
.
apply
(
result
);
}
protected
<
A
extends
Query
>
void
sendWokenQuery
(
A
query
,
ActorRef
responseReceiver
)
{
protected
<
A
extends
Query
>
Future
<
Object
>
sendWokenQuery
(
A
query
,
int
timeout
)
{
LOGGER
.
info
(
"Akka is trying to reach remote "
+
wokenPath
);
ClusterClient
.
Send
queryMessage
=
new
ClusterClient
.
Send
(
wokenPath
,
query
,
true
);
wokenClient
.
tell
(
queryMessage
,
responseReceiver
);
return
Patterns
.
ask
(
wokenClient
,
queryMessage
,
timeout
);
}
protected
ActorRef
createActor
(
String
actorBeanName
,
String
actorName
)
{
return
actorSystem
.
actorOf
(
SpringExtension
.
SPRING_EXTENSION_PROVIDER
.
get
(
actorSystem
)
.
props
(
actorBeanName
),
actorName
);
}
protected
ExecutionContext
getExecutor
()
{
return
actorSystem
.
dispatcher
();
}
}
This diff is collapsed.
Click to expand it.
src/main/java/eu/hbp/mip/controllers/ExperimentApi.java
+
31
−
8
View file @
3a91d3a9
package
eu.hbp.mip.controllers
;
import
akka.
actor.ActorRef
;
import
akka.
dispatch.OnSuccess
;
import
com.google.common.collect.Lists
;
import
com.google.gson.Gson
;
import
com.google.gson.GsonBuilder
;
...
...
@@ -17,6 +17,7 @@ import eu.hbp.mip.utils.HTTPUtil;
import
eu.hbp.mip.utils.JSONUtil
;
import
eu.hbp.mip.woken.messages.query.MethodsQuery
$
;
import
eu.hbp.mip.woken.messages.query.MethodsResponse
;
import
eu.hbp.mip.woken.messages.query.QueryResult
;
import
io.swagger.annotations.Api
;
import
io.swagger.annotations.ApiOperation
;
import
io.swagger.annotations.ApiParam
;
...
...
@@ -27,6 +28,8 @@ import org.springframework.cache.annotation.Cacheable;
import
org.springframework.http.HttpStatus
;
import
org.springframework.http.ResponseEntity
;
import
org.springframework.web.bind.annotation.*
;
import
scala.concurrent.ExecutionContext
;
import
scala.concurrent.Future
;
import
java.io.BufferedReader
;
import
java.io.IOException
;
...
...
@@ -73,7 +76,6 @@ public class ExperimentApi extends WokenClientController {
@Autowired
private
ExperimentRepository
experimentRepository
;
@ApiOperation
(
value
=
"Send a request to the workflow to run an experiment"
,
response
=
Experiment
.
class
)
@RequestMapping
(
method
=
RequestMethod
.
POST
)
public
ResponseEntity
<
String
>
runExperiment
(
@RequestBody
ExperimentQuery
expQuery
)
{
...
...
@@ -274,14 +276,35 @@ public class ExperimentApi extends WokenClientController {
return
new
ResponseEntity
<>(
gsonOnlyExposed
.
toJson
(
experiment
.
jsonify
()),
HttpStatus
.
OK
);
}
private
void
sendExperiment
(
Experiment
experiment
)
{
private
void
sendExperiment
(
final
Experiment
experiment
)
{
User
user
=
securityConfiguration
.
getUser
();
// this runs in the background. For future optimization: use a thread pool
final
eu
.
hbp
.
mip
.
woken
.
messages
.
query
.
ExperimentQuery
experimentQuery
=
experiment
.
prepareQuery
(
user
.
getUsername
());
ActorRef
experimentsManager
=
createActor
(
"experimentActor"
,
experiment
.
getUuid
().
toString
());
sendWokenQuery
(
experimentQuery
,
experimentsManager
);
final
ExecutionContext
ec
=
getExecutor
();
Future
<
Object
>
response
=
sendWokenQuery
(
experimentQuery
,
24
*
3600
);
response
.
onSuccess
(
new
OnSuccess
<
Object
>()
{
public
void
onSuccess
(
Object
result
)
{
QueryResult
queryResult
=
(
QueryResult
)
result
;
UUID
uuid
=
experiment
.
getUuid
();
LOGGER
.
info
(
"\n\nExperimentActor received response from woken for UUID: \n"
+
uuid
.
toString
());
Experiment
experiment
=
experimentRepository
.
findOne
(
uuid
);
if
(
experiment
==
null
)
{
LOGGER
.
error
(
"Experiment with UUID="
+
uuid
+
" not found in DB"
);
}
else
{
if
(
queryResult
.
error
().
nonEmpty
())
{
experiment
.
setHasServerError
(
true
);
experiment
.
setResult
(
queryResult
.
error
().
get
());
}
else
{
experiment
.
setResult
(
queryResult
.
data
().
get
().
compactPrint
());
}
experiment
.
setFinished
(
Date
.
from
(
queryResult
.
timestamp
().
toInstant
()));
experimentRepository
.
save
(
experiment
);
LOGGER
.
info
(
"Experiment "
+
uuid
+
" updated (finished)"
);
}
}
},
ec
);
}
private
void
sendExaremeExperiment
(
Experiment
experiment
,
String
algoCode
)
{
...
...
@@ -308,12 +331,12 @@ public class ExperimentApi extends WokenClientController {
{
experiment
.
setResult
(
"Unsupported variables !"
);
}
finishExpermient
(
experiment
);
finishExper
i
mient
(
experiment
);
}).
start
();
// << Temporary
}
private
void
finishExpermient
(
Experiment
experiment
)
private
void
finishExper
i
mient
(
Experiment
experiment
)
{
experiment
.
setFinished
(
new
Date
());
experimentRepository
.
save
(
experiment
);
...
...
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