add groups from CSV file and ignore IDs for JSON serialization

src/main/java/org/hbp/mip/MIPApplication.java

@@ -24,6 +24,7 @@ import com.fasterxml.jackson.core.JsonProcessingException;
 import com.fasterxml.jackson.databind.ObjectMapper;
 import io.swagger.annotations.Api;
 import org.hbp.mip.controllers.HibernateUtil;
+import org.hbp.mip.data.Database;
 import org.hbp.mip.model.User;
 import org.hibernate.Session;
 import org.springframework.beans.factory.annotation.Autowired;
@@ -91,6 +92,7 @@ public class MIPApplication extends WebSecurityConfigurerAdapter {
     OAuth2ClientContext oauth2ClientContext;
 
     public static void main(String[] args) {
+        Database.loadGroups();
         SpringApplication.run(MIPApplication.class, args);
     }
 

src/main/java/org/hbp/mip/controllers/GroupsApi.java

-/**
- * Created by mirco on 04.12.15.
- */
-
 package org.hbp.mip.controllers;
 
 

src/main/java/org/hbp/mip/data/Database.java

+package org.hbp.mip.data;
+
+import org.hbp.mip.controllers.HibernateUtil;
+import org.hbp.mip.model.Group;
+import org.hibernate.Session;
+
+import java.io.*;
+import java.util.LinkedList;
+import java.util.List;
+
+/**
+ * Created by mirco on 11.01.16.
+ */
+public class Database {
+
+    private static final String GROUPS_FILE = "data/groups.csv";
+    private static final String VARIABLES_FILE = "data/variables.csv";
+    private static final String SEPARATOR = ",";
+    private static final ClassLoader CL = Database.class.getClassLoader();
+
+    public static void loadGroups() {
+
+        String inputFile = "/home/mirco/Workspace/GitLab/mip/target/classes/data/groups.csv"; //CL.getResource(GROUPS_FILE).getFile();
+
+        List<Group> groups = new LinkedList<Group>();
+
+        File f = new File(inputFile);
+        FileReader fr;
+        BufferedReader br;
+
+        try {
+
+            fr = new FileReader(f);
+            br = new BufferedReader(fr);
+
+            int stackPtr = -1;
+            int oldIdx = -1;
+
+            Group root = new Group(); //root
+            root.setCode("root");
+            root.setLabel("root");
+
+            stackPtr++;
+            groups.add(root);
+
+            for (String line = br.readLine(); line != null; line = br.readLine()) {
+
+                String[] data = line.split(SEPARATOR);
+
+                int idx = data.length - 1;
+
+                String label = data[idx];
+                String code = label.replace(" ", "_");
+                Group g = new Group();
+                g.setLabel(label);
+                g.setCode(code);
+
+                if (idx > oldIdx && stackPtr > -1) {
+                    groups.get(stackPtr).addGroup(g);
+                } else if (idx < oldIdx) {
+                    stackPtr -= 2;
+                } else if (idx == oldIdx) {
+                    stackPtr--;
+                    groups.get(stackPtr).addGroup(g);
+                }
+
+                stackPtr++;
+                groups.add(g);
+
+                oldIdx = idx;
+
+            }
+
+            Session session = HibernateUtil.getSessionFactory().getCurrentSession();
+            session.beginTransaction();
+            for (Group group : groups)
+            {
+                session.save(group);
+            }
+            session.getTransaction().commit();
+
+            br.close();
+            fr.close();
+
+        } catch (FileNotFoundException e) {
+            e.printStackTrace();
+        } catch (IOException e) {
+            e.printStackTrace();
+        }
+    }
+}

src/main/java/org/hbp/mip/model/Article.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -17,6 +18,7 @@ import java.util.List;
 @Table(name = "`article`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class Article {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)

src/main/java/org/hbp/mip/model/Chart.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -16,6 +17,7 @@ import java.util.List;
 @Table(name = "`chart`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class Chart {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)

src/main/java/org/hbp/mip/model/ChartConfigSet.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -14,6 +15,7 @@ import javax.persistence.*;
 @Table(name = "`chart_config_set`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class ChartConfigSet {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)

src/main/java/org/hbp/mip/model/Dataset.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -17,6 +18,7 @@ import java.util.List;
 @Table(name = "`dataset`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class Dataset {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)

src/main/java/org/hbp/mip/model/Filter.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -14,6 +15,7 @@ import javax.persistence.*;
 @Table(name = "`filter`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class Filter {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)

src/main/java/org/hbp/mip/model/Group.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -16,13 +17,14 @@ import java.util.List;
 @Table(name = "`group`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class Group {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)
     private Long id = null;
     private String code = null;
     private String label = null;
-    @ManyToMany
+    @ManyToMany(fetch = FetchType.EAGER)
     private List<Group> groups = new LinkedList<Group>();
 
     public Group() {

src/main/java/org/hbp/mip/model/Model.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -15,6 +16,7 @@ import java.util.Date;
 @Table(name = "`model`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class Model {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)

src/main/java/org/hbp/mip/model/Query.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -16,6 +17,7 @@ import java.util.List;
 @Table(name = "`query`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class Query {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)

src/main/java/org/hbp/mip/model/Tag.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -14,6 +15,7 @@ import javax.persistence.*;
 @Table(name = "`tag`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class Tag {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)

src/main/java/org/hbp/mip/model/User.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -18,6 +19,7 @@ import java.util.regex.Pattern;
 @Table(name = "`user`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class User {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)

src/main/java/org/hbp/mip/model/Value.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -14,6 +15,7 @@ import javax.persistence.*;
 @Table(name = "`value`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class Value {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)

src/main/java/org/hbp/mip/model/Variable.java

@@ -4,6 +4,7 @@
 
 package org.hbp.mip.model;
 
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
 import com.fasterxml.jackson.annotation.JsonProperty;
 import io.swagger.annotations.ApiModel;
 import io.swagger.annotations.ApiModelProperty;
@@ -16,6 +17,7 @@ import java.util.List;
 @Table(name = "`variable`")
 @ApiModel(description = "")
 @javax.annotation.Generated(value = "class io.swagger.codegen.languages.SpringMVCServerCodegen", date = "2016-01-06T09:32:22.266Z")
+@JsonIgnoreProperties(value = { "id" })
 public class Variable {
     @Id
     @GeneratedValue(strategy = GenerationType.IDENTITY)

src/main/resources/data/groups.csv

+Brain anatomy,,
+,CSF,
+,,Ventricule
+,White matter,
+,,Brain stem
+,,Cerebellum
+,,Global
+,,OpticChiasm
+,Grey matter,
+,,Cerebellum
+,,Cerebral nuclei
+,,CSF
+,,Diencephalon
+,,Frontal
+,,Orbitalgyrus
+,,Insula
+,,Limbic
+,,Occipital
+,,Operculum
+,,Parietal
+,,Temporal
+,,Vessel
+,,Others
+Brain metabolism,,
+,PET,
+,,FDG
+,,PIB
+,,FDG_bl
+,,PIB_bl
+,,AV45_bl
+Clinical,,
+,Cognition,
+,,AV45
+,,CDRSB
+,,ADAS11
+,,ADAS13
+,,MMSE
+,,RAVLT
+,,RAVLT_immediate
+,,FAQ
+,,MOCA
+,,EcogPtMem
+,,EcogPtLang
+,,EcogPtVisspat
+,,EcogPtPlan
+,,EcogPtOrgan
+,,EcogPtDivatt
+,,EcogPtTotal
+,,EcogSPMem
+,,EcogSPLang
+,,EcogSPVisspat
+,,EcogSPPlan
+,,EcogSPOrgan
+,,EcogSPDivatt
+,,EcogSPTotal
+,,CDRSB_bl
+,,ADAS11_bl
+,,ADAS13_bl
+,,MMSE_bl
+,,RAVLT_bl
+,,RAVLT_immediate_bl
+,,FAQ_bl
+,,MOCA_bl
+,,EcogPtMem_bl
+,,EcogPtLang_bl
+,,EcogPtVisspat_bl
+,,EcogPtPlan_bl
+,,EcogPtOrgan_bl
+,,EcogPtDivatt_bl
+,,EcogPtTotal_bl
+,,EcogSPMem_bl
+,,EcogSPLang_bl
+,,EcogSPVisspat_bl
+,,EcogSPPlan_bl
+,,EcogSPOrgan_bl
+,,EcogSPDivatt_bl
+,,EcogSPTotal_bl

src/main/resources/data/variables.csv

+RID,,,,N,38,,,,,,,
+PTID,,,,T,,,,,,,,
+VISCODE,,,,T,20,,,,,X,,
+SITE,provenance,source,,I,,,,,,X,,
+COLPROT,provenance,protocol,,Enum,,,ADNI1|ADNI2|ADNIGO,,,X,,
+ORIGPROT,provenance,protocol,,Enum,,,ADNI1|ADNI2|ADNIGO,,,X,,
+EXAMDATE,provenance,date,,D,10,,yyyy-mm-dd,,,,,
+DX_bl,clinical,diagnostic,,Enum,,,AD|CN,,,X,,
+AGE,demographic,age,,I,3,,0..130,,X,,X,X
+PTGENDER,demographic,genre,,B,1,,1=Male,,,X,,
+PTEDUCAT,demographic,education,,I,2,,0..20,,X,,X,X
+PTETHCAT,demographic,ethny,,Enum,,,1=Hispanic or Latino,,,X,,
+PTRACCAT,demographic,country,,Enum,,,1=American Indian or Alaskan Native,,,X,,
+PTMARRY,demographic,marital status,,Enum,,,1=Married,,,X,,
+APOE4,polymorphism,APOE,,I,1,,0..2,,,X,,
+FDG,brain_metabolism,PET,,N,,,,,X,,X,X
+PIB,brain_metabolism,PET,,N,,,,,X,,X,X
+AV45,clinical,cognition,,N,,,,,X,,X,X
+CDRSB,clinical,cognition,,N,,,,,X,,X,X
+ADAS11,clinical,cognition,,N,,,,,X,,X,X
+ADAS13,clinical,cognition,,N,,,,,X,,X,X
+MMSE,clinical,cognition,,N,,,,,X,,X,X
+RAVLT,clinical,cognition,,N,,,,,X,,X,X
+RAVLT_immediate,clinical,cognition,,N,,,,,X,,X,X
+FAQ,clinical,cognition,,N,,,,,X,,X,X
+MOCA,clinical,cognition,,N,,,,,X,,X,X
+EcogPtMem,clinical,cognition,,N,,,,,X,,X,X
+EcogPtLang,clinical,cognition,,N,,,,,X,,X,X
+EcogPtVisspat,clinical,cognition,,N,,,,,X,,X,X
+EcogPtPlan,clinical,cognition,,N,,,,,X,,X,X
+EcogPtOrgan,clinical,cognition,,N,,,,,X,,X,X
+EcogPtDivatt,clinical,cognition,,N,,,,,X,,X,X
+EcogPtTotal,clinical,cognition,,N,,,,,X,,X,X
+EcogSPMem,clinical,cognition,,N,,,,,X,,X,X
+EcogSPLang,clinical,cognition,,N,,,,,X,,X,X
+EcogSPVisspat,clinical,cognition,,N,,,,,X,,X,X
+EcogSPPlan,clinical,cognition,,N,,,,,X,,X,X
+EcogSPOrgan,clinical,cognition,,N,,,,,X,,X,X
+EcogSPDivatt,clinical,cognition,,N,,,,,X,,X,X
+EcogSPTotal,clinical,cognition,,N,,,,,X,,X,X
+Ventricles,brain_anatomy,CSF,,N,,,,,X,,X,X
+Hippocampus,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+WholeBrain,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+Entorhinal,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+Fusiform,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+MidTemp,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+ICV,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+DX,clinical,diagnostic,,T,,,,,,X,,
+EXAMDATE_bl,provenance,date,,D,,,yyyy-mm-dd,,X,,X,X
+CDRSB_bl,clinical,cognition,,N,,,,,X,,X,X
+ADAS11_bl,clinical,cognition,,N,,,,,X,,X,X
+ADAS13_bl,clinical,cognition,,N,,,,,X,,X,X
+MMSE_bl,clinical,cognition,,N,,,,,X,,X,X
+RAVLT_bl,clinical,cognition,,N,,,,,X,,X,X
+RAVLT_immediate_bl,clinical,cognition,,N,,,,,X,,X,X
+FAQ_bl,clinical,cognition,,N,,,,,X,,X,X
+Ventricles_bl,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+Hippocampus_bl,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+WholeBrain_bl,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+Entorhinal_bl,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+Fusiform_bl,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+MidTemp_bl,brain_anatomy,grey_matter,,N,,,,,X,,X,X
+ICV_bl,brain_anatomy,globals,,N,,,,,X,,X,X
+MOCA_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogPtMem_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogPtLang_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogPtVisspat_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogPtPlan_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogPtOrgan_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogPtDivatt_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogPtTotal_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogSPMem_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogSPLang_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogSPVisspat_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogSPPlan_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogSPOrgan_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogSPDivatt_bl,clinical,cognition,,N,,,,,X,,X,X
+EcogSPTotal_bl,clinical,cognition,,N,,,,,X,,X,X
+FDG_bl,brain_metabolism,PET,,N,,,,,X,,X,X
+PIB_bl,brain_metabolism,PET,,N,,,,,X,,X,X
+AV45_bl,brain_metabolism,PET,,N,,,,,X,,X,X
+Years_bl,Date,year,,N,,,,,X,,X,X
+Month_bl,,,,N,,,,,X,,X,X
+Month,,,,N,,,,,X,,X,X
+M,,,,,,,,,,,,
+update_stamp,,,,D,10,,,,,,,
+Subj_ID,,,,N,,,,,,,,
+ScanDate,provenance,date,,D,10,,yyyy-mm-dd,,X,,X,X
+VisitCode,provenance,date,,T,,,,,,,,
+VisitNumber,visit,number,,I,,,,,,X,,
+TotalNumberofVisits,visit,number,,I,,,,,,X,,
+PeriodTime,visit,period,,N,,,,,X,,X,X
+MRIScanner,brain_scan,machine,,N,,,1.5|3.0,,,X,,
+3rdVentricle,brain_anatomy,csf,Brain/csf/Ventricule,N,20,,,cm3,X,,X,X
+4thVentricle,brain_anatomy,csf,Brain/csf/Ventricule,N,20,,,cm3,X,,X,X
+RightAccumbensArea,brain_anatomy,grey_matter,Brain/Cerebral nuclei/Basal Ganglia ,N,20,,,cm3,X,,X,X
+LeftAccumbensArea,brain_anatomy,grey_matter,Brain/Cerebral nuclei/Basal Ganglia ,N,20,,,cm3,X,,X,X
+RightAmygdala,brain_anatomy,grey_matter,Brain/Cerebral nuclei/Amygdala,N,20,,,cm3,X,,X,X
+LeftAmygdala,brain_anatomy,grey_matter,Brain/Cerebral nuclei/Amygdala,N,20,,,cm3,X,,X,X
+BrainStem,brain_anatomy,white_matter,Brain/Brain stem,N,20,,,cm3,X,,X,X
+RightCaudate,brain_anatomy,grey_matter,Brain/Cerebral nuclei/Basal Ganglia ,N,20,,,cm3,X,,X,X
+LeftCaudate,brain_anatomy,grey_matter,Brain/Cerebral nuclei/Basal Ganglia ,N,20,,,cm3,X,,X,X
+RightCerebellumExterior,brain_anatomy,grey_matter,Brain/Cerebellum,N,20,,,cm3,X,,X,X
+LeftCerebellumExterior,brain_anatomy,grey_matter,Brain/Cerebellum,N,20,,,cm3,X,,X,X
+RightCerebellumWhiteMatter,brain_anatomy,white_matter,Brain/Cerebellum,N,20,,,cm3,X,,X,X
+LeftCerebellumWhiteMatter,brain_anatomy,white_matter,Brain/Cerebellum,N,20,,,cm3,X,,X,X
+RightCerebralWhiteMatter,brain_anatomy,white_matter,Brain/Global,N,20,,,cm3,X,,X,X
+LeftCerebralWhiteMatter,brain_anatomy,white_matter,Brain/Global,N,20,,,cm3,X,,X,X
+CSF,brain_anatomy,white_matter,Brain/Global,N,20,,,cm3,X,,X,X
+RightHippocampus,brain_anatomy,grey_matter,Brain/Limbic,N,20,,,cm3,X,,X,X
+LeftHippocampus,brain_anatomy,grey_matter,Brain/Limbic,N,20,,,cm3,X,,X,X
+RightInfLatVent,brain_anatomy,grey_matter,Brain/csf/Ventricule,N,20,,,cm3,X,,X,X
+LeftInfLatVent,brain_anatomy,grey_matter,Brain/csf/Ventricule,N,20,,,cm3,X,,X,X
+RightLateralVentricle,brain_anatomy,grey_matter,Brain/csf/Ventricule,N,20,,,cm3,X,,X,X
+LeftLateralVentricle,brain_anatomy,grey_matter,Brain/csf/Ventricule,N,20,,,cm3,X,,X,X
+RightPallidum,brain_anatomy,grey_matter,Brain/Cerebral nuclei/Basal Ganglia ,N,20,,,cm3,X,,X,X
+LeftPallidum,brain_anatomy,grey_matter,Brain/Cerebral nuclei/Basal Ganglia ,N,20,,,cm3,X,,X,X
+RightPutamen,brain_anatomy,grey_matter,Brain/Cerebral nuclei/Basal Ganglia ,N,20,,,cm3,X,,X,X
+LeftPutamen,brain_anatomy,grey_matter,Brain/Cerebral nuclei/Basal Ganglia ,N,20,,,cm3,X,,X,X
+RightThalamusProper,brain_anatomy,grey_matter,,N,20,,,cm3,X,,X,X
+LeftThalamusProper,brain_anatomy,grey_matter,,N,20,,,cm3,X,,X,X
+RightVentralDC,brain_anatomy,grey_matter,Brain/Diencephalon,N,20,,,cm3,X,,X,X
+LeftVentralDC,brain_anatomy,grey_matter,Brain/Diencephalon,N,20,,,cm3,X,,X,X
+Rightvessel,brain_anatomy,grey_matter,Brain/Vessel,N,20,,,cm3,X,,X,X
+Leftvessel,brain_anatomy,grey_matter,Brain/Vessel,N,20,,,cm3,X,,X,X
+OpticChiasm,brain_anatomy,White_matter,Brain/OpticChiasm,N,20,,,cm3,X,,X,X
+CerebellarVermalLobulesI-V,brain_anatomy,grey_matter,Brain/Cerebellum,N,20,,,cm3,X,,X,X
+CerebellarVermalLobulesVI-VII,brain_anatomy,grey_matter,Brain/Cerebellum,N,20,,,cm3,X,,X,X
+CerebellarVermalLobulesVIII-X,brain_anatomy,grey_matter,Brain/Cerebellum,N,20,,,cm3,X,,X,X
+LeftBasalForebrain,brain_anatomy,grey_matter,Brain/Cerebral nuclei/BasalForebrain,N,20,,,cm3,X,,X,X
+RightBasalForebrain,brain_anatomy,grey_matter,Brain/Cerebral nuclei/BasalForebrain,N,20,,,cm3,X,,X,X
+RightACgGanteriorcingulategyrus,brain_anatomy,grey_matter,Brain/Limbic,N,20,,,cm3,X,,X,X
+LeftACgGanteriorcingulategyrus,brain_anatomy,grey_matter,Brain/Limbic,N,20,,,cm3,X,,X,X
+RightAInsanteriorinsula,brain_anatomy,grey_matter,Brain/Insula,N,20,,,cm3,X,,X,X
+LeftAInsanteriorinsula,brain_anatomy,grey_matter,Brain/Insula,N,20,,,cm3,X,,X,X
+RightAOrGanteriororbitalgyrus,brain_anatomy,grey_matter,Brain/Frontal/orbitalgyrus,N,20,,,cm3,X,,X,X
+LeftAOrGanteriororbitalgyrus,brain_anatomy,grey_matter,Brain/Frontal/orbitalgyrus,N,20,,,cm3,X,,X,X
+RightAnGangulargyrus,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+LeftAnGangulargyrus,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+RightCalccalcarinecortex,brain_anatomy,grey_matter,Brain/Occipital,N,20,,,cm3,X,,X,X
+LeftCalccalcarinecortex,brain_anatomy,grey_matter,Brain/Occipital,N,20,,,cm3,X,,X,X
+RightCOcentraloperculum,brain_anatomy,grey_matter,Brain/Operculum,N,20,,,cm3,X,,X,X
+LeftCOcentraloperculum,brain_anatomy,grey_matter,Brain/Operculum,N,20,,,cm3,X,,X,X
+RightCuncuneus,brain_anatomy,grey_matter,Brain/Operculum,N,20,,,cm3,X,,X,X
+LeftCuncuneus,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+RightEntentorhinalarea,brain_anatomy,grey_matter,Brain/Limbic,N,20,,,cm3,X,,X,X
+LeftEntentorhinalarea,brain_anatomy,grey_matter,Brain/Limbic,N,20,,,cm3,X,,X,X
+RightFOfrontaloperculum,brain_anatomy,grey_matter,Brain/Operculum,N,20,,,cm3,X,,X,X
+LeftFOfrontaloperculum,brain_anatomy,grey_matter,Brain/Operculum,N,20,,,cm3,X,,X,X
+RightFRPfrontalpole,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+LeftFRPfrontalpole,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+RightFuGfusiformgyrus,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X
+LeftFuGfusiformgyrus,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X
+RightGRegyrusrectus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+LeftGRegyrusrectus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+RightIOGinferioroccipitalgyrus,brain_anatomy,grey_matter,Brain/Occipital,N,20,,,cm3,X,,X,X
+LeftIOGinferioroccipitalgyrus,brain_anatomy,grey_matter,Brain/Occipital,N,20,,,cm3,X,,X,X
+RightITGinferiortemporalgyrus,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X
+LeftITGinferiortemporalgyrus,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X
+RightLiGlingualgyrus,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+LeftLiGlingualgyrus,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+RightLOrGlateralorbitalgyrus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+LeftLOrGlateralorbitalgyrus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+RightMCgGmiddlecingulategyrus,brain_anatomy,grey_matter,Brain/Limbic,N,20,,,cm3,X,,X,X
+LeftMCgGmiddlecingulategyrus,brain_anatomy,grey_matter,Brain/Limbic,N,20,,,cm3,X,,X,X
+RightMFCmedialfrontalcortex,brain_anatomy,grey_matter,Brain/frontal,N,20,,,cm3,X,,X,X
+LeftMFCmedialfrontalcortex,brain_anatomy,grey_matter,Brain/frontal,N,20,,,cm3,X,,X,X
+RightMFGmiddlefrontalgyrus,brain_anatomy,grey_matter,Brain/frontal,N,20,,,cm3,X,,X,X
+LeftMFGmiddlefrontalgyrus,brain_anatomy,grey_matter,Brain/frontal,N,20,,,cm3,X,,X,X
+RightMOGmiddleoccipitalgyrus,brain_anatomy,grey_matter,Brain/Occipital,N,20,,,cm3,X,,X,X
+LeftMOGmiddleoccipitalgyrus,brain_anatomy,grey_matter,Brain/Occipital,N,20,,,cm3,X,,X,X
+RightMOrGmedialorbitalgyrus,brain_anatomy,grey_matter,Brain/Frontal/orbitalgyrus,N,20,,,cm3,X,,X,X
+LeftMOrGmedialorbitalgyrus,brain_anatomy,grey_matter,Brain/Frontal/orbitalgyrus,N,20,,,cm3,X,,X,X
+RightMPoGpostcentralgyrusmedialsegment,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+LeftMPoGpostcentralgyrusmedialsegment,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+RightMPrGprecentralgyrusmedialsegment,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+LeftMPrGprecentralgyrusmedialsegment,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+RightMSFGsuperiorfrontalgyrusmedialsegment,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+LeftMSFGsuperiorfrontalgyrusmedialsegment,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+RightMTGmiddletemporalgyrus,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X
+LeftMTGmiddletemporalgyrus,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X
+RightOCPoccipitalpole,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X
+LeftOCPoccipitalpole,brain_anatomy,grey_matter,Brain/Occipital,N,20,,,cm3,X,,X,X
+RightOFuGoccipitalfusiformgyrus,brain_anatomy,grey_matter,Brain/Occipital,N,20,,,cm3,X,,X,X
+LeftOFuGoccipitalfusiformgyrus,brain_anatomy,grey_matter,Brain/Occipital,N,20,,,cm3,X,,X,X
+RightOpIFGopercularpartoftheinferiorfrontalgyrus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+LeftOpIFGopercularpartoftheinferiorfrontalgyrus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+RightOrIFGorbitalpartoftheinferiorfrontalgyrus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+LeftOrIFGorbitalpartoftheinferiorfrontalgyrus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+RightPCgGposteriorcingulategyrus,brain_anatomy,grey_matter,Brain/Limbic/,N,20,,,cm3,X,,X,X
+LeftPCgGposteriorcingulategyrus,brain_anatomy,grey_matter,Brain/Limbic/,N,20,,,cm3,X,,X,X
+RightPCuprecuneus,brain_anatomy,grey_matter,Brain/Limbic/,N,20,,,cm3,X,,X,X
+LeftPCuprecuneus,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+RightPHGparahippocampalgyrus,brain_anatomy,grey_matter,Brain/Limbic/,N,20,,,cm3,X,,X,X
+LeftPHGparahippocampalgyrus,brain_anatomy,grey_matter,Brain/Limbic/,N,20,,,cm3,X,,X,X
+RightPInsposteriorinsula,brain_anatomy,grey_matter,Brain/insula,N,20,,,cm3,X,,X,X
+LeftPInsposteriorinsula,brain_anatomy,grey_matter,Brain/insula,N,20,,,cm3,X,,X,X
+RightPOparietaloperculum,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+LeftPOparietaloperculum,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+RightPoGpostcentralgyrus,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+LeftPoGpostcentralgyrus,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+RightPOrGposteriororbitalgyrus,brain_anatomy,grey_matter,Brain/Frontal/orbitalgyrus,N,20,,,cm3,X,,X,X
+LeftPOrGposteriororbitalgyrus,brain_anatomy,grey_matter,Brain/Frontal/orbitalgyrus,N,20,,,cm3,X,,X,X
+RightPPplanumpolare,brain_anatomy,grey_matter,Brain/Temporal/,N,20,,,cm3,X,,X,X
+LeftPPplanumpolare,brain_anatomy,grey_matter,Brain/Temporal/,N,20,,,cm3,X,,X,X
+RightPrGprecentralgyrus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+LeftPrGprecentralgyrus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+RightPTplanumtemporale,brain_anatomy,grey_matter,Brain/temporal,N,20,,,cm3,X,,X,X
+LeftPTplanumtemporale,brain_anatomy,grey_matter,Brain/temporal,N,20,,,cm3,X,,X,X
+RightSCAsubcallosalarea,brain_anatomy,grey_matter,Brain/frontal,N,20,,,cm3,X,,X,X
+LeftSCAsubcallosalarea,brain_anatomy,grey_matter,Brain/frontal,N,20,,,cm3,X,,X,X
+RightSFGsuperiorfrontalgyrus,brain_anatomy,grey_matter,Brain/frontal,N,20,,,cm3,X,,X,X
+LeftSFGsuperiorfrontalgyrus,brain_anatomy,grey_matter,Brain/frontal,N,20,,,cm3,X,,X,X
+RightSMCsupplementarymotorcortex,brain_anatomy,grey_matter,Brain/frontal,N,20,,,cm3,X,,X,X
+LeftSMCsupplementarymotorcortex,brain_anatomy,grey_matter,Brain/frontal,N,20,,,cm3,X,,X,X
+RightSMGsupramarginalgyrus,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+LeftSMGsupramarginalgyrus,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+RightSOGsuperioroccipitalgyrus,brain_anatomy,grey_matter,Brain/Occipital,N,20,,,cm3,X,,X,X
+LeftSOGsuperioroccipitalgyrus,brain_anatomy,grey_matter,Brain/Occipital,N,20,,,cm3,X,,X,X
+RightSPLsuperiorparietallobule,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+LeftSPLsuperiorparietallobule,brain_anatomy,grey_matter,Brain/Parietal/,N,20,,,cm3,X,,X,X
+RightSTGsuperiortemporalgyrus,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X
+LeftSTGsuperiortemporalgyrus,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X
+RightTMPtemporalpole,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X
+LeftTMPtemporalpole,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X
+RightTrIFGtriangularpartoftheinferiorfrontalgyrus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+LeftTrIFGtriangularpartoftheinferiorfrontalgyrus,brain_anatomy,grey_matter,Brain/Frontal,N,20,,,cm3,X,,X,X
+RightTTGtransversetemporalgyrus,brain_anatomy,grey_matter,Brain/Temoral,N,20,,,cm3,X,,X,X
+LeftTTGtransversetemporalgyrus,brain_anatomy,grey_matter,Brain/Temporal,N,20,,,cm3,X,,X,X