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HBP Medical Informatics Platform
portal-backend
Commits
04075032
Commit
04075032
authored
8 years ago
by
Mirco Nasuti
Browse files
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update woken-messages version and use it for listing methods too
parent
bbc7d2a2
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Changes
3
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3 changed files
pom.xml
+1
-1
1 addition, 1 deletion
pom.xml
src/main/java/eu/hbp/mip/akka/ListenerActor.java
+6
-1
6 additions, 1 deletion
src/main/java/eu/hbp/mip/akka/ListenerActor.java
src/main/java/eu/hbp/mip/controllers/ExperimentApi.java
+27
-36
27 additions, 36 deletions
src/main/java/eu/hbp/mip/controllers/ExperimentApi.java
with
34 additions
and
38 deletions
pom.xml
+
1
−
1
View file @
04075032
...
...
@@ -49,7 +49,7 @@
<spring-data-jpa.version>
1.10.2.RELEASE
</spring-data-jpa.version>
<spring-boot-starter-actuator.version>
1.4.0.RELEASE
</spring-boot-starter-actuator.version>
<aspectjweaver.version>
1.8.9
</aspectjweaver.version>
<woken-messages.version>
a0244b
0
</woken-messages.version>
<woken-messages.version>
d455fa
0
</woken-messages.version>
<javax-inject.version>
1
</javax-inject.version>
<akka-actor.version>
2.4.11
</akka-actor.version>
<akka-remote.version>
2.4.11
</akka-remote.version>
...
...
This diff is collapsed.
Click to expand it.
src/main/java/eu/hbp/mip/akka/ListenerActor.java
+
6
−
1
View file @
04075032
package
eu.hbp.mip.akka
;
import
akka.actor.UntypedActor
;
import
eu.hbp.mip.messages.external.Methods
;
import
eu.hbp.mip.messages.external.QueryResult
;
import
org.springframework.context.annotation.Scope
;
...
...
@@ -25,7 +26,11 @@ public class ListenerActor extends UntypedActor {
public
void
onReceive
(
Object
message
)
throws
Exception
{
if
(
message
instanceof
QueryResult
)
{
QueryResult
queryResult
=
(
QueryResult
)
message
;
listeningService
.
listen
(
queryResult
.
data
().
get
());
listeningService
.
listen
(
"received query result"
);
}
else
if
(
message
instanceof
Methods
)
{
Methods
methods
=
(
Methods
)
message
;
listeningService
.
listen
(
"received methods"
);
}
else
{
unhandled
(
message
);
...
...
This diff is collapsed.
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src/main/java/eu/hbp/mip/controllers/ExperimentApi.java
+
27
−
36
View file @
04075032
...
...
@@ -10,12 +10,12 @@ import com.google.gson.JsonParser;
import
eu.hbp.mip.akka.ListenerActor
;
import
eu.hbp.mip.akka.ListeningService
;
import
eu.hbp.mip.configuration.SecurityConfiguration
;
import
eu.hbp.mip.messages.external.MethodsQuery
;
import
eu.hbp.mip.model.Experiment
;
import
eu.hbp.mip.model.ExperimentQuery
;
import
eu.hbp.mip.model.User
;
import
eu.hbp.mip.repositories.ExperimentRepository
;
import
eu.hbp.mip.repositories.ModelRepository
;
import
eu.hbp.mip.utils.JSONUtil
;
import
io.swagger.annotations.Api
;
import
io.swagger.annotations.ApiOperation
;
import
io.swagger.annotations.ApiParam
;
...
...
@@ -27,10 +27,7 @@ import org.springframework.http.HttpStatus;
import
org.springframework.http.ResponseEntity
;
import
org.springframework.web.bind.annotation.*
;
import
java.io.BufferedReader
;
import
java.io.IOException
;
import
java.io.InputStream
;
import
java.io.InputStreamReader
;
import
java.net.MalformedURLException
;
import
java.util.Date
;
import
java.util.Iterator
;
...
...
@@ -217,18 +214,21 @@ public class ExperimentApi {
StringBuilder
response
=
new
StringBuilder
();
// TODO: Use akka
int
code
=
500
;
JsonObject
catalog
=
new
JsonParser
().
parse
(
response
.
toString
()).
getAsJsonObject
();
InputStream
is
=
ExperimentApi
.
class
.
getClassLoader
().
getResourceAsStream
(
EXAREME_ALGO_JSON_FILE
);
InputStreamReader
isr
=
new
InputStreamReader
(
is
);
BufferedReader
br
=
new
BufferedReader
(
isr
);
JsonObject
exaremeAlgo
=
new
JsonParser
().
parse
(
br
).
getAsJsonObject
();
ActorSelection
wokenActor
=
actorSystem
.
actorSelection
(
wokenPath
);
wokenActor
.
tell
(
new
MethodsQuery
(),
new
ListenerActor
(
new
ListeningService
()).
getSelf
());
catalog
.
get
(
"algorithms"
).
getAsJsonArray
().
add
(
exaremeAlgo
);
// TODO: remove this
int
code
=
200
;
JsonObject
catalog
=
new
JsonParser
().
parse
(
response
.
toString
()).
getAsJsonObject
();
//
// InputStream is = ExperimentApi.class.getClassLoader().getResourceAsStream(EXAREME_ALGO_JSON_FILE);
// InputStreamReader isr = new InputStreamReader(is);
// BufferedReader br = new BufferedReader(isr);
// JsonObject exaremeAlgo = new JsonParser().parse(br).getAsJsonObject();
//
// catalog.get("algorithms").getAsJsonArray().add(exaremeAlgo);
//
return
new
ResponseEntity
<>(
gson
.
toJson
(
catalog
),
HttpStatus
.
valueOf
(
code
));
}
...
...
@@ -306,19 +306,19 @@ public class ExperimentApi {
String
url
=
miningExaremeQueryUrl
+
"/"
+
EXAREME_LR_ALGO
;
// Results are stored in the experiment object
try
{
executeExperiment
(
url
,
query
,
experiment
);
}
catch
(
IOException
e
)
{
LOGGER
.
trace
(
e
);
LOGGER
.
warn
(
"Exareme experiment failed to run properly !"
);
setExperimentError
(
e
,
experiment
);
}
if
(!
JSONUtil
.
isJSONValid
(
experiment
.
getResult
()))
{
experiment
.
setResult
(
"Unsupported variables !"
);
}
finishExpermient
(
experiment
);
//
try {
//
executeExperiment(url, query, experiment);
//
} catch (IOException e) {
//
LOGGER.trace(e);
//
LOGGER.warn("Exareme experiment failed to run properly !");
//
setExperimentError(e, experiment);
//
}
//
//
if(!JSONUtil.isJSONValid(experiment.getResult()))
//
{
//
experiment.setResult("Unsupported variables !");
//
}
//
finishExpermient(experiment);
}
}.
start
();
}
...
...
@@ -331,15 +331,6 @@ public class ExperimentApi {
LOGGER
.
info
(
"Experiment updated (finished)"
);
}
private
static
void
executeExperiment
(
String
url
,
String
query
,
Experiment
experiment
)
throws
IOException
{
StringBuilder
results
=
new
StringBuilder
();
// TODO: use akka
int
code
=
500
;
experiment
.
setResult
(
results
.
toString
());
experiment
.
setHasError
(
code
>=
400
);
experiment
.
setHasServerError
(
code
>=
500
);
}
private
static
void
setExperimentError
(
IOException
e
,
Experiment
experiment
)
{
experiment
.
setHasError
(
true
);
experiment
.
setHasServerError
(
true
);
...
...
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