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  • ThanKarab's avatar
    New updated DOCKERFILE. · ba8216be
    ThanKarab authored 
    The DOCKERFILE uses new mvn and jdk images and has no dependencies on HBPMedical repos.
Removed many unused old files.
Removed docker specific folder.
    ba8216be
README.md 2.20 KiB

CHUV License DockerHub

Backend for the MIP portal

DEV Deployment

To run the backend using an IDE for development, such as IntelliJ, you need a running instance of PostgreSQL.

Deployment (using a Docker image)

Build the image: docker build -t hbpmip/portal-backend:latest .

To use this image, you need a running instance of PostgreSQL and to configure the software using the following environment variables.

LOG LEVELS

  • LOG_LEVEL: log level for the developer added logs. Default is "ERROR".
  • LOG_LEVEL_FRAMEWORK: log level for all the framework logs. Default is "ERROR".

AUTHENTICATION

  • AUTHENTICATION: true for production, false for development.

DATABASE CONFIGURATION

  • PORTAL_DB_URL: JDBC URL to connect to the portal database, default value is "jdbc:postgresql://127.0.0.1:5432/portal".
  • PORTAL_DB_SCHEMA: Database schema, default value is "public".
  • PORTAL_DB_USER: User to use when connecting to the portal database, default value is "postgres".
  • PORTAL_DB_PASSWORD: Password to use when connecting to the portal database.

EXTERNAL SERVICES

  • MIPENGINE_URL: URL to MIPENGINE server. Default is "http://localhost:5000" .
  • EXAREME_URL: URL to Exareme server. Default is "http://localhost:9090" .
  • GALAXY_URL: URL to Workflow server. Default is "http://localhost:8090/" .
  • GALAXY_API_KEY: The api key to authorize galaxy requests.
  • GALAXY_USERNAME: The username of galaxy user to be able to embed the frame.
  • GALAXY_PASSWORD: The password of galaxy user.

KEYCLOAK

  • KEYCLOAK_AUTH_URL: Keycloak authentication URL.
  • KEYCLOAK_REALM: Keycloak realm user for authentication.
  • KEYCLOAK_CLIENT_ID: The keycloak client id.
  • KEYCLOAK_CLIENT_SECRET: The keycloak secret to be able to authenticate.

Acknowledgements

This work has been funded by the European Union Seventh Framework Program (FP7/2007­2013) under grant agreement no. 604102 (HBP)