Skip to content
Snippets Groups Projects
Commit 2e30d798 authored by Jan Fousek's avatar Jan Fousek
Browse files

added connecitivity gen for 1000Brains

parent 65013a2c
No related branches found
No related tags found
No related merge requests found
......@@ -3,7 +3,7 @@ from setuptools import find_packages, setup
setup(
name='tvb-ebrains-data',
packages=find_packages(),
version='0.2.0',
version='0.2.1',
install_requires=[
'tvb-library',
]
......
......@@ -132,3 +132,17 @@ class Brains1000Dataset(DataProxyConnectivityDataset):
fname = f'{subject}_SC_7NW100parc.txt'
W = np.loadtxt(self.open_file(f'{self.version}/Schaefer/Matrices/{fname}'))
return W
def get_connectivity(self, subject, scaling_factor=124538.470647693):
SC = self.load_sc(subject)
SC = SC / scaling_factor
conn = connectivity.Connectivity(
weights = SC,
tract_lengths=np.ones_like(SC),
centres = np.zeros(np.shape(SC)[0]),
speed = np.r_[np.Inf]
)
conn.compute_region_labels()
logger.warning("Placeholder region names!")
return conn
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment