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Commit a91919ed authored by Rajalekshmi Deepu's avatar Rajalekshmi Deepu
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modified the site-config yaml files for JUSUF and JURECA-DC

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site-config/jurecadc/compilers.yaml
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compilers: compilers:
- compiler: - compiler:
spec: gcc@11.3.0 spec: gcc@12.3.0
paths: paths:
cc: /p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/bin/gcc cc: /p/software/jurecadc/stages/2024/software/GCCcore/12.3.0/bin/gcc
cxx: /p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/bin/g++ cxx: /p/software/jurecadc/stages/2024/software/GCCcore/12.3.0/bin/g++
f77: /p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/bin/gfortran f77: /p/software/jurecadc/stages/2024/software/GCCcore/12.3.0/bin/gfortran
fc: /p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/bin/gfortran fc: /p/software/jurecadc/stages/2024/software/GCCcore/12.3.0/bin/gfortran
flags: {} flags: {}
operating_system: rocky8 operating_system: rocky8
target: x86_64 target: x86_64
modules: modules:
- StdEnv/2023 - StdEnv/2024
environment: {} environment: {}
extra_rpaths: [] extra_rpaths: []
- compiler: - compiler:
......
site-config/jurecadc/config.yaml
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config: config:
build_stage: build_stage:
- /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/spack-stage - /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/spack-stage
- $tempdir/$user/spack-stage - $tempdir/$USER/spack-stage
source_cache: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/source-cache #- $SCRATCH_cswmanage/$USER/$SYSTEMNAME/spack-stage
test_stage: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/test source_cache: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/source-cache
misc_cache: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/cache test_stage: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/test
misc_cache: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/cache
install_tree: install_tree:
root: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/install root: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/install
db_lock_timeout: 10 db_lock_timeout: 10
site-config/jurecadc/packages.yaml
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# `spack external find` with # `spack external find` with
# Currently Loaded Modules: # Currently Loaded Modules:
# 1) Stages/2023 (S) 2) GCCcore/.11.3.0 (H) 3) zlib/.1.2.12 (H) 4) binutils/.2.38 (H) 5) StdEnv/2023 6) spack/0.19.2 # 1) Stages/2024 (S) 5) StdEnv/2024 9) UCX-settings/RC 13) libxml2/.2.11.4 (H) 17) hwloc/2.9.1 (g)
# 2) GCCcore/.12.3.0 (H) 6) GCC/12.3.0 10) UCX/default (g) 14) OpenSSL/1.1 18) PMIx/4.2.6
# 3) zlib/.1.2.13 (H) 7) numactl/2.0.16 11) pscom/.5-default (H) 15) libevent/.2.1.12 (H) 19) MPI-settings/UCX
# 4) binutils/.2.40 (H) 8) CUDA/12 (g) 12) XZ/.5.4.2 (H) 16) libpciaccess/.0.17 (H) 20) ParaStationMPI/5.9.2-1 (g)
packages: packages:
all:
variants: +cuda cuda_arch=75,80
llvm:
variants: ~cuda
findutils:
externals:
- spec: findutils@4.6.0
prefix: /usr
groff:
externals:
- spec: groff@1.22.3
prefix: /usr
flex:
externals:
- spec: flex@2.6.1+lex
prefix: /usr
diffutils:
externals:
- spec: diffutils@3.6
prefix: /usr
# TODO git, git-lsf and especially curl have been removed due to system curl not having support for https
# git:
# externals:
# - spec: git@2.31.1~tcltk
# prefix: /usr
m4:
externals:
- spec: m4@1.4.18
prefix: /usr
# TODO Using system version causes 'missing makeinfo', as the binary is not available
# texinfo:
# externals:
# - spec: texinfo@6.5
# prefix: /usr
subversion: subversion:
externals: externals:
- spec: subversion@1.10.2 - spec: subversion@1.10.2
prefix: /usr prefix: /usr
libtool: cuda:
externals: buildable: False
- spec: libtool@2.4.6 externals:
prefix: /usr - spec: cuda@12.2.91
prefix: /p/software/jurecadc/stages/2024/software/CUDA/12/
modules:
- Stages/2024
- CUDA/12
cudnn:
buildable: False
externals:
- spec: cudnn@8.9.5.29-12
prefix: /p/software/jurecadc/stages/2024/software/cuDNN/8.9.5.29-CUDA-12/
modules:
- Stages/2024
- cuDNN/8.9.5.29-CUDA-12
mpi:
buildable: False
mpich:
buildable: False
externals:
- spec: "mpich@4.1.5%gcc@12.3.0 arch=linux-rocky8-zen2"
prefix: /p/software/jurecadc/stages/2024/software/psmpi/5.9.2-1-GCC-12.3.0-pmi/
modules:
- Stages/2024
- GCC/12.3.0
- ParaStationMPI/5.9.2-1-pmi
all:
compiler: ["gcc@12.3"]
variants: +mpi +cuda cuda_arch=75
llvm:
variants: ~cuda
binutils: binutils:
buildable: False
externals: externals:
- spec: binutils@2.38 - spec: binutils@2.40
prefix: /p/software/jurecadc/stages/2023/software/binutils/2.38-GCCcore-11.3.0 prefix: /p/software/jurecadc/stages/2024/software/binutils/2.40-GCCcore-12.3.0
openssl: openssl:
buildable: False
externals: externals:
- spec: openssl@1.1.1k - spec: openssl@1.1.1k
prefix: /p/software/jurecadc/stages/2023/software/OpenSSL/1.1 prefix: /p/software/jurecadc/stages/2024/software/OpenSSL/1.1
pkgconf: numactl:
externals: buildable: False
- spec: pkgconf@1.4.2 externals:
prefix: /usr - spec: numactl@2.0.16
automake: prefix: /p/software/jurecadc/stages/2024/software/numactl/2.0.16-GCCcore-12.3.0
externals: ucx:
- spec: automake@1.16.1 buildable: False
prefix: /usr externals:
tar: - spec: ucx@1.15.0
externals: prefix: /p/software/jurecadc/stages/2024/software/UCX/default-GCCcore-12.3.0
- spec: tar@1.30 xz:
prefix: /usr buildable: False
gmake: externals:
externals: - spec: xz@5.4.2
- spec: gmake@4.2.1 prefix: /p/software/jurecadc/stages/2024/software/XZ/5.4.2-GCCcore-12.3.0
prefix: /usr libxml2:
openssh: buildable: False
externals: externals:
- spec: openssh@8.0p1 - spec: libxml2@2.11.4
prefix: /usr prefix: /p/software/jurecadc/stages/2024/software/libxml2/2.11.4-GCCcore-12.3.0
# curl: libevent:
# externals: buildable: False
# - spec: curl@7.61.1+gssapi+ldap+nghttp2 externals:
# prefix: /usr - spec: libevent@2.1.12
# git-lfs: prefix: /p/software/jurecadc/stages/2024/software/libevent/2.1.12-GCCcore-12.3.0
# externals: libpciaccess:
# - spec: git-lfs@2.13.3 buildable: False
# prefix: /usr externals:
gawk: - spec: libpciaccess@0.17
externals: prefix: /p/software/jurecadc/stages/2024/software/libpciaccess/0.17-GCCcore-12.3.0
- spec: gawk@4.2.1 hwloc:
prefix: /usr buildable: False
coreutils: externals:
externals: - spec: hwloc@2.9.1
- spec: coreutils@8.30 prefix: /p/software/jurecadc/stages/2024/software/hwloc/2.9.1-GCCcore-12.3.0
prefix: /usr pmix:
bison: buildable: False
externals: externals:
- spec: bison@3.0.4 - spec: pmix@4.2.6
prefix: /usr prefix: /p/software/jurecadc/stages/2024/software/PMIx/4.2.6-GCCcore-12.3.0
autoconf:
externals:
- spec: autoconf@2.69
prefix: /usr
# packages:
# all:
# compiler: [gcc@11.2.0]
# python:
# buildable: False
# version: [3.9.6]
# externals:
# - spec: "python@3.9.6%gcc@11.2.0 arch=linux-rocky8-zen2"
# prefix: /p/software/jurecadc/stages/2022/software/Python/3.9.6-GCCcore-11.2.0/
# openssl:
# buildable: False
# version: [1.1.1k]
# externals:
# - spec: openssl@1.1.1k
# prefix: /p/software/jurecadc/stages/2022/software/OpenSSL/1.1/
# mpi:
# buildable: False
# openmpi:
# externals:
# - spec: "openmpi@4.1.2%gcc@11.2.0 arch=linux-rocky8-zen2"
# prefix: /p/software/jurecadc/stages/2022/software/OpenMPI/4.1.2-GCC-11.2.0/
site-config/jusuf/compilers.yaml
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compilers: compilers:
- compiler: - compiler:
spec: gcc@11.3.0 spec: gcc@12.3.0
paths: paths:
cc: /p/software/jusuf/stages/2023/software/GCCcore/11.3.0/bin/gcc cc: /p/software/jusuf/stages/2024/software/GCCcore/12.3.0/bin/gcc
cxx: /p/software/jusuf/stages/2023/software/GCCcore/11.3.0/bin/g++ cxx: /p/software/jusuf/stages/2024/software/GCCcore/12.3.0/bin/g++
f77: /p/software/jusuf/stages/2023/software/GCCcore/11.3.0/bin/gfortran f77: /p/software/jusuf/stages/2024/software/GCCcore/12.3.0/bin/gfortran
fc: /p/software/jusuf/stages/2023/software/GCCcore/11.3.0/bin/gfortran fc: /p/software/jusuf/stages/2024/software/GCCcore/12.3.0/bin/gfortran
flags: {} flags: {}
operating_system: rocky8 operating_system: rocky8
target: x86_64 target: x86_64
modules: modules:
- StdEnv/2023 - StdEnv/2024
environment: {} environment: {}
extra_rpaths: [] extra_rpaths: []
- compiler: - compiler:
......
site-config/jusuf/config.yaml
+ 7
− 6
View file @ a91919ed
config: config:
build_stage: build_stage:
- /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/spack-stage - /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/spack-stage
- $tempdir/$user/spack-stage #- $SCRATCH_cswmanage/$USER/$SYSTEMNAME/spack-stage
source_cache: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/source-cache - $tempdir/$USER/spack-stage
test_stage: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/test source_cache: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/source-cache
misc_cache: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/spack/user-cache/$user/cache test_stage: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/test
misc_cache: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/spack/user-cache/$USER/cache
install_tree: install_tree:
root: /p/usersoftware/swmanage/EBRAINS/$SYSTEMNAME/install root: /p/usersoftware/ebrains-sw-stack/ebrains-24.04/$SYSTEMNAME/install
db_lock_timeout: 10 db_lock_timeout: 10
site-config/jusuf/packages.yaml
+ 84
− 109
View file @ a91919ed
# `spack external find` with # `spack external find` with
# Currently Loaded Modules: # Currently Loaded Modules:
# 1) Stages/2023 (S) 2) GCCcore/.11.3.0 (H) 3) zlib/.1.2.12 (H) 4) binutils/.2.38 (H) 5) StdEnv/2023 6) spack/0.19.2 # 1) Stages/2024 (S) 5) StdEnv/2024 9) UCX-settings/RC 13) libxml2/.2.11.4 (H) 17) hwloc/2.9.1 (g)
# 2) GCCcore/.12.3.0 (H) 6) GCC/12.3.0 10) UCX/default (g) 14) OpenSSL/1.1 18) PMIx/4.2.6
# 3) zlib/.1.2.13 (H) 7) numactl/2.0.16 11) pscom/.5-default (H) 15) libevent/.2.1.12 (H) 19) MPI-settings/UCX
# 4) binutils/.2.40 (H) 8) CUDA/12 (g) 12) XZ/.5.4.2 (H) 16) libpciaccess/.0.17 (H) 20) ParaStationMPI/5.9.2-1 (g)
packages: packages:
all:
variants: +cuda cuda_arch=75,80
llvm:
variants: ~cuda
findutils:
externals:
- spec: findutils@4.6.0
prefix: /usr
groff:
externals:
- spec: groff@1.22.3
prefix: /usr
flex:
externals:
- spec: flex@2.6.1+lex
prefix: /usr
diffutils:
externals:
- spec: diffutils@3.6
prefix: /usr
# TODO git, git-lsf and especially curl have been removed due to system curl not having support for https
# git:
# externals:
# - spec: git@2.31.1~tcltk
# prefix: /usr
m4:
externals:
- spec: m4@1.4.18
prefix: /usr
# TODO Using system version causes 'missing makeinfo', as the binary is not available
# texinfo:
# externals:
# - spec: texinfo@6.5
# prefix: /usr
subversion: subversion:
externals: externals:
- spec: subversion@1.10.2 - spec: subversion@1.10.2
prefix: /usr prefix: /usr
libtool: cuda:
externals: buildable: False
- spec: libtool@2.4.6 externals:
prefix: /usr - spec: cuda@12.2.91
prefix: /p/software/jusuf/stages/2024/software/CUDA/12/
modules:
- Stages/2024
- CUDA/12
cudnn:
buildable: False
externals:
- spec: cudnn@8.9.5.29-12
prefix: /p/software/jusuf/stages/2024/software/cuDNN/8.9.5.29-CUDA-12/
modules:
- Stages/2024
- cuDNN/8.9.5.29-CUDA-12
mpi:
buildable: False
mpich:
buildable: False
externals:
- spec: "mpich@4.1.5%gcc@12.3.0 arch=linux-rocky8-zen2"
prefix: /p/software/jusuf/stages/2024/software/psmpi/5.9.2-1-GCC-12.3.0-pmi/
modules:
- Stages/2024
- GCC/12.3.0
- ParaStationMPI/5.9.2-1-pmi
all:
compiler: ["gcc@12.3"]
variants: +mpi +cuda cuda_arch=75
llvm:
variants: ~cuda
binutils: binutils:
buildable: False
externals: externals:
- spec: binutils@2.38 - spec: binutils@2.40
prefix: /p/software/jusuf/stages/2023/software/binutils/2.38-GCCcore-11.3.0 prefix: /p/software/jusuf/stages/2024/software/binutils/2.40-GCCcore-12.3.0
openssl: openssl:
buildable: False
externals: externals:
- spec: openssl@1.1.1k - spec: openssl@1.1.1k
prefix: /p/software/jusuf/stages/2023/software/OpenSSL/1.1 prefix: /p/software/jusuf/stages/2024/software/OpenSSL/1.1
pkgconf: numactl:
externals: buildable: False
- spec: pkgconf@1.4.2 externals:
prefix: /usr - spec: numactl@2.0.16
automake: prefix: /p/software/jusuf/stages/2024/software/numactl/2.0.16-GCCcore-12.3.0
externals: ucx:
- spec: automake@1.16.1 buildable: False
prefix: /usr externals:
tar: - spec: ucx@1.15.0
externals: prefix: /p/software/jusuf/stages/2024/software/UCX/default-GCCcore-12.3.0
- spec: tar@1.30 xz:
prefix: /usr buildable: False
gmake: externals:
externals: - spec: xz@5.4.2
- spec: gmake@4.2.1 prefix: /p/software/jusuf/stages/2024/software/XZ/5.4.2-GCCcore-12.3.0
prefix: /usr libxml2:
openssh: buildable: False
externals: externals:
- spec: openssh@8.0p1 - spec: libxml2@2.11.4
prefix: /usr prefix: /p/software/jusuf/stages/2024/software/libxml2/2.11.4-GCCcore-12.3.0
# curl: libevent:
# externals: buildable: False
# - spec: curl@7.61.1+gssapi+ldap+nghttp2 externals:
# prefix: /usr - spec: libevent@2.1.12
# git-lfs: prefix: /p/software/jusuf/stages/2024/software/libevent/2.1.12-GCCcore-12.3.0
# externals: libpciaccess:
# - spec: git-lfs@2.13.3 buildable: False
# prefix: /usr externals:
gawk: - spec: libpciaccess@0.17
externals: prefix: /p/software/jusuf/stages/2024/software/libpciaccess/0.17-GCCcore-12.3.0
- spec: gawk@4.2.1 hwloc:
prefix: /usr buildable: False
coreutils: externals:
externals: - spec: hwloc@2.9.1
- spec: coreutils@8.30 prefix: /p/software/jusuf/stages/2024/software/hwloc/2.9.1-GCCcore-12.3.0
prefix: /usr pmix:
bison: buildable: False
externals: externals:
- spec: bison@3.0.4 - spec: pmix@4.2.6
prefix: /usr prefix: /p/software/jusuf/stages/2024/software/PMIx/4.2.6-GCCcore-12.3.0
autoconf:
externals:
- spec: autoconf@2.69
prefix: /usr
# packages:
# all:
# compiler: [gcc@11.2.0]
# python:
# buildable: False
# version: [3.9.6]
# externals:
# - spec: "python@3.9.6%gcc@11.2.0 arch=linux-rocky8-zen2"
# prefix: /p/software/jusuf/stages/2022/software/Python/3.9.6-GCCcore-11.2.0/
# openssl:
# buildable: False
# version: [1.1.1k]
# externals:
# - spec: openssl@1.1.1k
# prefix: /p/software/jusuf/stages/2022/software/OpenSSL/1.1/
# mpi:
# buildable: False
# openmpi:
# externals:
# - spec: "openmpi@4.1.2%gcc@11.2.0 arch=linux-rocky8-zen2"
# prefix: /p/software/jusuf/stages/2022/software/OpenMPI/4.1.2-GCC-11.2.0/
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