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Support Allen/SONATA-style single sample somata in SWC. (#1091)

Benjamin Cumming authored 5 years ago

* add parse_swc_allen method

* small fixes and clean up

* add test for incomplete branches and make error messages more consistent

* add extra swc assertion, and remove single sample special case

efa85c86

Name	Last commit	Last update
..
example
test
tutorial
pybind11 @ e2b884c3
CMakeLists.txt
__init__.py
cells.cpp
cells.hpp
config.cpp
context.cpp
context.hpp
conversion.hpp
domain_decomposition.cpp
error.cpp
error.hpp
event_generator.cpp
event_generator.hpp
flat_cell_builder.cpp
identifiers.cpp
mechanism.cpp
morph_parse.cpp
morph_parse.hpp
morphology.cpp
mpi.cpp
mpi.hpp
profiler.cpp
pyarb.cpp
readme.md
recipe.cpp
recipe.hpp
s_expr.cpp
s_expr.hpp
sampling.cpp
schedule.cpp
schedule.hpp
setup.py
simulation.cpp
single_cell_model.cpp
spikes.cpp
strprintf.hpp

Arbor

The Arbor Python package is a wrapper around the high-performance C++ library Arbor, for constructing and running simulations multi-compartment neuron models, from single cell models to large networks.

Documentation is available online at Read the Docs.

Submit a ticket if you have any questions or want help.