- Generate timestamped VERSION once, to properly group on Test.PyPI. Example:
  - https://github.com/arbor-sim/arbor/actions/runs/2696804929
  - https://test.pypi.org/project/arbor/0.7rc20220719101015/
- Update/simplify release documentation.
- Update to v0.7

* Some badges corrected (build) and added (Gitter)
* Minor Spack backports
* Small updates to `release.rst`

Github seems to dislike spaces in Markdown URLs.

* Update URLs to arbor-sim.org
* update badge links

In response to:

https://gizmodo.com/u-s-federal-investigators-are-reportedly-looking-into-1846707144

Rationale:
* CodeCov didn't detect the breach for two months
* They took a further 2 weeks to alert users after that
* Their efforts to address the issue after that have been painful to watch
  * https://github.com/codecov/codecov-action/issues/281#issuecomment-823407167

* Update `README.md`: moved citation to `doc/index.rst`.
* Advertise Py3.9 compat PyPI in setup.py
* Fix typos.

Reomove Travis CI integration.

* remove Travis yaml and build scripts
* remove Travis badges from README and RTD docs
* replace Travis badge with GitHub Actions badge
* add a RTD badge to the README

Fixes #1338.

* Add link to Zenodo entry for version 0.5 release.

Guide Python users to the Python installation steps early in the installation guide.

This is a bit experimental. It builds arbor with `-fprofile-arcs -ftest-coverage` and creates a docker image with just the project binaries, lcov, gcov and generated `.gcno` files. This should still be reasonably small since there are no object files etc. When run on daint, `.gcna` files are produced (should be thread / process safe according to gcc's manual) inside of the container, and `lcov` is used to combine all those things into a single file with a random name in the mounted git project folder (hopefully this solves clashes with multiple nodes). After all tests are run, the combined reports are uploaded to codecov.io.

Combine badges on readme and move ci git submodule to `ext/`

* Add Dockerfiles for MPI + CUDA test builds on Daint
* Add bors.toml for CI on Daint
* Add the separate ci repo as submodule for convenience
* Add a CI badge for master to the top of the readme

A support for Gitpod.io, a free automated
dev environment that makes contributing and generally working on GitHub
projects much easier. It allows anyone to start a ready-to-code dev
environment for any branch, issue and pull request with a single click.

Add citation information to the readme.

fixes #627

Added an installation guide to the Read The Docs
Removed the outdated build/install information from README.md
Link from README to Read The Docs
Updated the splash page for Read The Docs

* Use ARB_ and arb_ as variable prefixes in place of NMC_ and nmc_.
* Replace references to 'NestMC' and 'NEST MC' to refer instead to Arbor.
* Use 'arbor' as the sim name in generated validation data.
* Reflow long-line paragraphs in `tests/ubench/README.md`.
* Change names of CUDA mechanism and CUDA kernel libraries to include arbor name.

Ben Cumming authored 7 years ago and Sam Yates committed 7 years ago

Update README.md to use badge from updated Travis CI page, and updated references to the old nestmc-proto repository.

Status of the master branch is displayed at the top of the README.
The status is based on the result of the automated daily build.

Ben Cumming authored 7 years ago and Sam Yates committed 7 years ago

* Add support for CMake scripts provided by TBB.
* Update required cmake version to 3.0.

* hack to get linking to work on Cray PE

* improve comments and remove redundant include in CMakeLists

* firewall the tbb cmake files

* tbb threading back end to_string includes version number

Vasileios Karakasis authored 7 years ago and Sam Yates committed 7 years ago

* Update `README.md` to reflect the CMake options for vectorization.

Includes a fix to the readme which applies to any external modcc, and a way to keep from rebuilding locally an external modcc.

* Fix CMakeLists to handle build as a subproject

When several CMake generated projects are build together, it is common
practice to have a 'superproject' CMakeLists that uses
  add_subdir(proj1)
  add_subdir(proj2)
  ...
where each subproject is a self contained CMake based project
(Example proj1=HPX, proj2=nestmc, proj3=another, ...)

CMAKE_SOURCE_DIR always points to the top level directory which
is the superproject dir in this case, whereas PROJECT_SOURCE_DIR
always points to the root of the current project() in the CMakeLists
so one shouod use PROJECT_SOURCE_DIR as this gets the relative paths
correct.

* Add option to turn off auto generation from *.mod files

* Fix #134 : Change CMake WITH_OPTION to NMC_WITH_OPTION, compiler #define to NMC_HAVE_OPTION

1) The user may select an option by saying NMC_WITH_XXX

2) This may trigger CMake to use find_package(...) or setup some
other variables. CMake can then set variable NMC_HAVE_XXX and add a
what has actually been used.

3) Code should use #ifdef NMC_HAVE_XXX to check for a feature

Old CMake/define      New CMake                 Compiler #define
----------------      ---------                 ----------------
THREADING_MODEL       NMC_THREAD_MODEL
    WITH_TBB          NMC_WITH_TBB              NMC_HAVE_TBB
    WITH_OMP          NMC_WITH_OMP              NMC_HAVE_OMP
    WITH_SERIAL       NMC_WITH_SERiAL           NMC_HAVE_SERIAL

WITH_MPI              NMC_WITH_MPI              NMC_HAVE_MPI
WITH_CUDA             NMC_WITH_CUDA             NMC_HAVE_CUDA
WITH_GPU                                        NMC_HAVE_GPU
WITH_ASSERTIONS       NMC_WITH_ASSERTIONS       NMC_HAVE_ASSERTIONS
WITH_TRACE            NMC_WITH_TRACE            NMC_HAVE_TRACE
WITH_PROFILING        NMC_WITH_PROFILING        NMC_HAVE_PROFILING

Other user visible CMake vars
-----------------------------
VECTORIZE_TARGET            -> NMC_VECTORIZE_TARGET
USE_OPTIIZED_KERNELS        -> NMC_USE_OPTIIZED_KERNELS
BUILD_VALIDATION_DATA       -> NMC_BUILD_VALIDATION_DATA
BUILD_JULIA_VALIDATION_DATA -> NMC_BUILD_JULIA_VALIDATION_DATA
BUILD_NRN_VALIDATION_DATA   -> NMC_BUILD_NRN_VALIDATION_DATA
VALIDATION_DATA_DIR         -> NMC_VALIDATION_DATA_DIR

Variables such as NMC_THREADING_MODEL and NMC_VECTORIZE_TARGET now use
enumerated cmake values so you can toggle between them in ccmake gui.
SYSTEM_TYPE_CRAY/BGQ        -> NMC_SYSTEM_TYPE (Generic/Cray/BGQ)

* Use generator expression for modcc path

Some IDE's (like Xcode for example), override the CMake binary paths
and add /Debug or /Release etc so rules that have hard coded paths
to binaries will fail.

 - changed back a non-typo (that will tech me to use spell checking...)
 - Output result of test-function as exit value

Add Julia installation steps and example run

Silence variable not used warning in validate.cpp
Add missing include to rangeutil.hpp