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  1. Jan 21, 2017
  2. Oct 03, 2016
  3. Sep 05, 2016
    • Sam Yates's avatar
      Finalize fvm_multicell · cea41d09
      Sam Yates authored
      * Fix bug in 'close' event delivery for multicell.
      * Fix displacement scaling bug in gather_all_with_partition.
      * Command line parameter io, reporting for new miniapp options.
      * Only master rank performs command line parameter writing.
      * Add test for mpi::gather_all and mpi::gather_all_with_partition.
      * Extend utility of `util::assign`, `util::append`.
      cea41d09
  4. Sep 03, 2016
    • Sam Yates's avatar
      Bugfixes; tie multicells to multi-cell cell group. · 4f49fe38
      Sam Yates authored
      * Include new option -g in miniapp to specify cell group size.
      * Miniapp -r option generates a ring network.
      * Modify EXPECTS() so that when assertions are disabled we
        avoid unused variable warnings.
      4f49fe38
  5. Aug 18, 2016
  6. Aug 16, 2016
  7. Aug 11, 2016
  8. Aug 08, 2016
  9. Aug 05, 2016
    • Sam Yates's avatar
      Command-line support for limitting trace output. · b3c4654b
      Sam Yates authored
      New options:
       * -p, --probe-ratio      Attach probes to this proportion of cells
       * -X, --probe-soma-only  Don't probe dendrites
       * -P, --trace-prefix     Specify where to write traces
                                (default: 'trace_')
       * -T, --trace-max-gid    Don't trace cells with a larger gid than this.
      b3c4654b
  10. Aug 04, 2016
  11. Aug 03, 2016
  12. Jul 18, 2016
  13. Jul 05, 2016
    • Benjamin Cumming's avatar
      82014283
    • Benjamin Cumming's avatar
      code review changes for miniapp · b75a0251
      Benjamin Cumming authored
      - improve robustness of time step and time integration
        interval selection
      - changes of the type `if (!id)` to `if (id==0)`.
      - fix bug selecting source cell gid when generating
        network connections
      - make all-to-all network a user-specified option
          - updated README
      - fix bug where an initial spike was not generated for
        the first cell on a communicator when the cell gid
        was a multiple of 20
      b75a0251
  14. Jul 01, 2016
    • Benjamin Cumming's avatar
      support time stepping parameters from user · f019b305
      Benjamin Cumming authored
      * the user can now specify simulation time and time step size
          - via command line arguments
          - via json input file
      f019b305
    • Benjamin Cumming's avatar
      improved spike chain generation in minapp · fdedb831
      Benjamin Cumming authored
      * add header only library TCLAP for parsing command line arguments
          - added as git submodule
          - update CMakeLists to include headers
      * remove the ring model from miniapp
      * add support for user supplied parameters for miniapp
          - arguments for cell counts etc can be command line flags
          - or in a user-defined json input file
      * the all-to-all model supports synapses-per-cell is less than
        the total number of cells
          - in this case a random set of sources is selected
      fdedb831
  15. Jun 28, 2016
  16. Jun 27, 2016
  17. Jun 24, 2016
    • Sam Yates's avatar
      WIP · 17075f74
      Sam Yates authored
      17075f74
    • Benjamin Cumming's avatar
      Add MPI support to miniapp · 520d27a1
      Benjamin Cumming authored
      Added MPI support to the miniapp
      - added ring model and all-to-all model
      - started refactoring general model setup steps into a model class in
        miniapp
      - optional -DWITH_MPI to turn on MPI support
      520d27a1
  18. Jun 22, 2016