* Add WITH_MPI CMake option to enable MPI code in application
* Use find_package(MPI) and set up flags, etc. for MPI
* Extra defines to disable the inclusion of C++ MPI headers for
  MPICH and OpenMPI.
* Fix signed/unsigned compare warning in algorithms.hpp

* Add file cmake/CompilerOptions.cmake for setting up compiler
  specific options
* Disable 'missing-braces' warning on Clang
* Avoid defect in g++ 4.9.2 standard library that omits move
  constructor for `stdd::ifstream`
* Remove signed/unsigned warning in test_optional.cpp

Add all directories with files to include to CMakeLists.txt
Make all linux folder based includes global (remove the folder structure)

Builds modcc from modparser as an external project;
executable will reside under BUILD/external/bin where
BUILD is the CMake build directory.

CMake hackery (see 'build_all_mods' target) should generate
required module .hpp files from .mod files before the
cellalgo library is built, if the header files are
missing or out of date.

This should also suffice for performing out-of-source
builds.

Begin iterator resets the input stream.

Adde `-g' flag in compilation to allow debugging.

Moved SWC parser's and cell record's implementation details to a
separate file. Also added braces around single-line control/loop blocks.