Commits · 33eee7692360a4dfe016f86e5bc441383dfa7630 · arbor-sim / arbor · GitLab

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Jun 08, 2016
- Use correct path location when building modparser in README.md · 33eee769
  Wouter Klijn authored 8 years ago
  
  33eee769
Jun 07, 2016
- finish merge with swc_geometry · 9ada48a5
  Benjamin Cumming authored 8 years ago
  
  9ada48a5
- move modparser to externals · 7bc96528
  Benjamin Cumming authored 8 years ago
  
  7bc96528
- move submodules to external path · 0ffd49a9
  Benjamin Cumming authored 8 years ago
  
  0ffd49a9
- add timing to the ball_and_3stick validation test · bcfb79fb
  Benjamin Cumming authored 8 years ago
  
  bcfb79fb
Jun 06, 2016
- Update README.md · 6687c3de
  Ben Cumming authored 8 years ago
  
  6687c3de
- add modparser module and update generate script · 2ffed80b
  Benjamin Cumming authored 8 years ago
  
  2ffed80b
May 25, 2016
- add validation for branching dendrites with multiple stimulii · a772ff2e
  Benjamin Cumming authored 8 years ago
  
  a772ff2e
- add extra validation test for swc from file · 6f06ea41
  Benjamin Cumming authored 8 years ago
  
  6f06ea41
May 24, 2016
- Merge pull request #17 from eth-cscs/cell-construction · a8ac6d48
  Ben Cumming authored 8 years ago
```
Cell construction
```
  a8ac6d48
- fix merge conflicts · cd6dfcd4
  Benjamin Cumming authored 8 years ago
  
  cd6dfcd4
- Merge pull request #15 from eth-cscs/cell-from-swc · e8ea5b91
  Ben Cumming authored 8 years ago
```
Read cell from swc file
```
  e8ea5b91
- refactor unit tests · 75cdf2f2
  Benjamin Cumming authored 8 years ago
  
  75cdf2f2
- add validation test for ball and stick · d35a7cbc
  Benjamin Cumming authored 8 years ago
  
  d35a7cbc
May 23, 2016
- single compartment validation test · 781481ce
  Benjamin Cumming authored 8 years ago
  
  781481ce
May 20, 2016
- keep working on validation · 423e6541
  Benjamin Cumming authored 8 years ago
  
  423e6541
- refactor validation from tests · cdbcb5c0
  Benjamin Cumming authored 8 years ago
  
  cdbcb5c0
May 12, 2016
- Merge branch 'mechanisms' of github.com:eth-cscs/cell_algorithms into mechanisms · 0a844497
  Benjamin Cumming authored 8 years ago
  
  0a844497
- add stimulii to cells · ebd1af83
  Benjamin Cumming authored 8 years ago
  
  ebd1af83
May 10, 2016
- add description of units and scaling in FVM discretization · 468edb2d
  Benjamin Cumming authored 8 years ago
  
  468edb2d
May 09, 2016
- fix area units in unit tests for mc models · 0e091c56
  Benjamin Cumming authored 8 years ago
  
  0e091c56
May 06, 2016
- single compartment cell works · a76f91e3
  Benjamin Cumming authored 8 years ago
  
  a76f91e3
- change formulation to have units mV on LHS and RHS · 0c5ffe53
  Benjamin Cumming authored 8 years ago
  
  0c5ffe53
May 04, 2016
- add verbose hh mech file for debugging · 1bff0674
  Benjamin Cumming authored 8 years ago
  
  1bff0674
- very close to working prototype · 4018fbf3
  Benjamin Cumming authored 8 years ago
  
  4018fbf3
May 02, 2016
- fix OS X initializer list issue · 0a4f0c3b
  Benjamin Cumming authored 8 years ago
  
  0a4f0c3b
Apr 28, 2016
- big push towards full cell integration · 6871a9c7
  Benjamin Cumming authored 8 years ago
  
  6871a9c7
Apr 22, 2016
- Construction of a cell from an swc file. · a37c0431
  Vasileios Karakasis authored 8 years ago
```
+ some other minor improvements.
```
  a37c0431
Apr 20, 2016
- Equality operator for points. · 393b145e
  Vasileios Karakasis authored 8 years ago
  
  393b145e
- Algorithms for retrieving child counts and branches encoding. · e7e99c71
  Vasileios Karakasis authored 8 years ago
  
  e7e99c71
Apr 19, 2016
- Merge branch 'cell-construction' of github.com:eth-cscs/cell_algorithms into cell-construction · ebd6515f
  Benjamin Cumming authored 8 years ago
  
  ebd6515f
- fix corner case of is_minimal_degree · e2348921
  Benjamin Cumming authored 8 years ago
  
  e2348921
Apr 18, 2016
- Merge branch 'cell-construction' into cell-from-swc · 6ef76b41
  Vasileios Karakasis authored 8 years ago
  
  6ef76b41
- refactor compartment description from high level cell · 1b264160
  Benjamin Cumming authored 8 years ago
  
  1b264160
- Merge branch 'cell-construction' into cell-from-swc · c59a2c84
  Vasileios Karakasis authored 8 years ago
  
  c59a2c84
- Reject SWC input if branches are not contiguously numbered. · 41972a06
  Vasileios Karakasis authored 8 years ago
  
  41972a06
- Algorithm for checking contiguous numbering in cell branches. · d04de96a
  Vasileios Karakasis authored 8 years ago
```
+ converted swc_record::kind to an ``enum class``
```
  d04de96a
Apr 15, 2016
- generate full lin. system and RHS · 0c81a3f6
  Benjamin Cumming authored 8 years ago
  
  0c81a3f6
- fix matrix entries for soma · bcda6cb6
  Benjamin Cumming authored 8 years ago
  
  bcda6cb6
Apr 14, 2016
- Merge branch 'cell-construction' of github.com:eth-cscs/cell_algorithms into cell-construction · ac9656aa
  Benjamin Cumming authored 8 years ago
  
  ac9656aa