Sam Yates authored 6 years ago and Benjamin Cumming committed 6 years ago

Make a new installed library `libarborenv.a` covering a subset of the `sup` library functionality, with corresponding installed CMake target `arbor::arborenv`.

* Move NVML or CUDA 10 API decision for GPU UUID discovery to top level CMake.
* Move affinity, concurrency, MPI init guard, and gpu detection and negotiation functionality out of `sup` and into new library `arborenv`.
* Move `include/arbor` in project tree to `arbor/include/arbor` (for consistency across `sup`, `arbor`, and `arborenv` subdirectories.)
* Wrangle more explicit library dependency adding CMake code into the installed `arbor-config.cmake`, to help mitigate [CMake issue #18614](https://gitlab.kitware.com/cmake/cmake/issues/18614).
* Have `arborenv` code throw `std::runtime_exception` instead of `arb::arbor_error`. (We are still using `arb::mpi_error` though for a failure in `with_mpi`.)
* Move `scope_exit` into the `arb::util` namespace.
* Merge `affinity.hpp` into `concurrency.hpp`.
* Rename `gpu.hpp` to `gpu_env.hpp` in `arborenv` includes.

Fixes #647.

Sam Yates authored 6 years ago and Benjamin Cumming committed 6 years ago

CMake wants to run a device link pass with nvcc despite
there being no CUDA seperable compilation enabled anywhere,
and then passes on -pthread to that unnecessary nvcc
invocation when we use the Threads dependency. The latter,
at least, is fixed in CMake 3.13.

We used the prefer -pthread option for compatibility with
our earlier build configuration; turning it off will
hopefully have no consequence.

We also enable device linking on the arbor library. Which
is not needed, but if they are going to insist on doing it,
it should be on the library rather than the executable.

CMake then goes and does it on the executable anyway. Great.

Fixes #645.

Sam Yates authored 6 years ago and Benjamin Cumming committed 6 years ago

Fixes #618 and fixes #617.

*  Add convenience targets: 'examples' for all examples; 'tests' for all tests.
* Add support for component-testing in installed CMake package.
* Allow test for MPI support via find_package via component.
* Remove REQUIRED specification from `find_dependency()` commands in generated config.
* Update `mech_vec.cpp` to match new `fvm_lowered_cell_impl` constructor.

Sam Yates authored 6 years ago and Benjamin Cumming committed 6 years ago

Fixes #612.

* Fix issues with permissions on directories created at install time (at least for CMake 3.11+).
* Add CMake export guff to various targets and install an `arbor-config.cmake` for consumption by other CMake-based projects.