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Unverified Commit 3d725ce1 authored by Sebastian Schmitt's avatar Sebastian Schmitt Committed by GitHub
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Fix some typos (#1175)

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......@@ -65,7 +65,7 @@ identified with a probe-id: ``cell_member_type{gid, k}``.
One probe address may describe more than one concrete probe, depending
upon the interpretation of the probe address by the cell group. In this
instance, each of the concerete probes will be associated with the
instance, each of the concrete probes will be associated with the
same probe-id. Samplers can distinguish between different probes with
the same id by their probe index (see below).
......@@ -88,7 +88,7 @@ will be passed to a sampler function or function object:
};
using sampler_function =
std::function<void (probe_metadta, size_t, const sample_record*)>;
std::function<void (probe_metadata, size_t, const sample_record*)>;
where the parameters are respectively the probe metadata, the number of
samples, and finally a pointer to the sequence of sample records.
......@@ -298,7 +298,7 @@ Helper classes for probe/sampler management
The ``simulation`` and ``mc_cell_group`` classes use classes defined in
``scheduler_map.hpp`` to simplify the management of sampler--probe associations
and probe metdata.
and probe metadata.
``sampler_association_map`` wraps an ``unordered_map`` between sampler association
handles and tuples (*schedule*, *sampler*, *probe set*, *policy*), with thread-safe
......
......@@ -70,8 +70,8 @@ Cell kinds
* **Morphology**: The morphology of a cable cell is composed of a branching tree of one-dimensional line segments.
Strictly speaking, Arbor represents a morphology is an *acyclic directed graph*, with the soma at the root.
* **Detectors**: Spike detectors generate spikes when the voltage at location on the cell
passes a threshold. Dectectors act as **sources** of :ref:`connections <modelconnections>`.
* **Synapses**: Synapases act as **targets** of :ref:`connections <modelconnections>`.
passes a threshold. Detectors act as **sources** of :ref:`connections <modelconnections>`.
* **Synapses**: Synapses act as **targets** of :ref:`connections <modelconnections>`.
A synapse is described by a synapse type (with associated parameters) and location on a cell.
* **Gap Junction Sites**: These refer to the sites of :ref:`gap junctions <modelgapjunctions>`.
They are declared by specifying a location on a branch of the cell.
......
......@@ -81,7 +81,7 @@ An example of a partition load balance with hints reads as follows:
n_cells = 100
recipe = my_recipe(n_cells)
# The hints perfer the multicore backend, so the decomposition is expected
# The hints prefer the multicore backend, so the decomposition is expected
# to never have cell groups on the GPU, regardless of whether a GPU is
# available or not.
cable_hint = arb.partition_hint()
......@@ -117,14 +117,14 @@ Therefore, the following data structures are used to describe domain decompositi
.. class:: domain_decomposition
Describes a domain decomposition and is soley responsible for describing the
Describes a domain decomposition and is solely responsible for describing the
distribution of cells across cell groups and domains.
It holds cell group descriptions (:attr:`groups`) for cells assigned to
the local domain, and a helper function (:func:`gid_domain`) used to
look up which domain a cell has been assigned to.
The :class:`domain_decomposition` object also has meta-data about the
number of cells in the global model, and the number of domains over which
the model is destributed.
the model is distributed.
.. Note::
The domain decomposition represents a division of **all** of the cells in
......
......@@ -160,7 +160,7 @@ Cell morphology
A segment can not be added before its parent, hence the first segment
is always at the root. In this manner, a segment tree is
always guarenteed to be in a correct state, with consistent parent-child
always guaranteed to be in a correct state, with consistent parent-child
indexing, and with *n* segments numbered from *0* to *n-1*.
To illustrate how a segment tree is constructed by appending segments,
......@@ -327,7 +327,7 @@ Cell morphology
is stored for fast look up during later stages of model building, and
querying by users.
For this reason, morpholgies are read only. To change a morphology, a new
For this reason, morphologies are read only. To change a morphology, a new
morphology should be created using a new segment tree.
There is one *constructor* for a morphology:
......
......@@ -236,7 +236,7 @@ In order to analyze the data collected from an :class:`arbor.probe` the samples
import arbor
# Instatitate the simulation.
# Instantiate the simulation.
sim = arbor.simulation(recipe, decomp, context)
# Build the sample recorder on cell 0 and probe 0 with regular sampling interval of 0.1 ms
......
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