`Spack <https://spack.io>`_ is a package manager for supercomputers, Linux, and macOS. It makes installing scientific software easy. Spack isn’t tied to a particular language; you can build a software stack in Python or R, link to libraries written in C, C++, or Fortran, and easily swap compilers or target specific microarchitectures.
Install Arbor
-------------
To install Arbor using Spack, run ``spack install arbor``.
.. Note::
To get help in case of problems, please make an issue at `Arbor's issues page <https://github.com/arbor-sim/arbor/issues>`_.
Build Options
-------------
Arbor can be built with various options, just like the regular CMake build. For instance, to have Spack build Arbor with MPI enabled, run ``spack install arbor +mpi``. For a full overview of the build options, please refer to the `our Spack package.yml <https://github.com/arbor-sim/arbor/blob/master/spack/package.py>`_.
Why use Spack?
--------------
`Spack <https://spack.io>`_ is a package manager for supercomputers, Linux, and macOS. It makes installing scientific software easy. Spack isn’t tied to a particular language; you can build a software stack in Python or R, link to libraries written in C, C++, or Fortran, and easily swap compilers or target specific microarchitectures.
A powerful feature for users of scientific software is Spack's `Environment feature <https://spack.readthedocs.io/en/latest/environments.html>`_. One can define and store software environments for reuse, to generate container images or reproduce and rerun software workflows at a later time.
Issues when using Spack
-----------------------
On some systems initial Spack setup requires an extra step currently not shown in the up-front installations instructions of the `Spack documentation <https://spack.readthedocs.io>`_, which is adding the compilers on your system to Spack's configuration. If you don't, you may get this error:
.. code-block:: bash
No satisfying compiler available is compatible with a satisfying os
The solution is to run (`as described further down in the official documentation <https://spack.readthedocs.io/en/latest/getting_started.html#compiler-configuration>`_):
.. code-block:: bash
./spack compiler add
To get help in case of problems, please make an issue at `Arbor's issues page <https://github.com/arbor-sim/arbor/issues>`_.
Since we have created ``ncells`` cells, we have ``ncells`` traces. We should be seeing phase shifted traces, as the action potential propagated through the network.
...
...
@@ -170,4 +169,4 @@ We plot the results using pandas and seaborn:
The full code
*************
You can find the full code of the example at ``python/examples/network_ring.py``.
You can find the full code of the example at ``python/example/network_ring.py``.