SDE examples (#2030)
Addresses #1987 * reproducibility test for random number generator * C++ example demonstrating Ornstein-Uhlenbeck process * Python example featuring stochastic mechanism * stochastic mechanism catalogue The Python example is contributed by Jannik Luboeinski's (@jlubo): https://github.com/jlubo/arbor_ou_lif_example and adapted to fit into Arbor.
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- arbor/include/arbor/mechcat.hpp 1 addition, 0 deletionsarbor/include/arbor/mechcat.hpp
- doc/concepts/mechanisms.rst 52 additions, 0 deletionsdoc/concepts/mechanisms.rst
- example/CMakeLists.txt 1 addition, 0 deletionsexample/CMakeLists.txt
- example/ornstein_uhlenbeck/CMakeLists.txt 23 additions, 0 deletionsexample/ornstein_uhlenbeck/CMakeLists.txt
- example/ornstein_uhlenbeck/ornstein_uhlenbeck.mod 38 additions, 0 deletionsexample/ornstein_uhlenbeck/ornstein_uhlenbeck.mod
- example/ornstein_uhlenbeck/ou.cpp 181 additions, 0 deletionsexample/ornstein_uhlenbeck/ou.cpp
- example/ornstein_uhlenbeck/readme.md 7 additions, 0 deletionsexample/ornstein_uhlenbeck/readme.md
- mechanisms/CMakeLists.txt 6 additions, 0 deletionsmechanisms/CMakeLists.txt
- mechanisms/stochastic/ou_input.mod 86 additions, 0 deletionsmechanisms/stochastic/ou_input.mod
- python/example/ou_lif/Readme.md 37 additions, 0 deletionspython/example/ou_lif/Readme.md
- python/example/ou_lif/lif.mod 72 additions, 0 deletionspython/example/ou_lif/lif.mod
- python/example/ou_lif/ou_lif.py 342 additions, 0 deletionspython/example/ou_lif/ou_lif.py
- python/example/ou_lif/traces.svg 22364 additions, 0 deletionspython/example/ou_lif/traces.svg
- python/mechanism.cpp 1 addition, 0 deletionspython/mechanism.cpp
- scripts/run_cpp_examples.sh 1 addition, 1 deletionscripts/run_cpp_examples.sh
- test/unit/CMakeLists.txt 3 additions, 2 deletionstest/unit/CMakeLists.txt
- test/unit/test_rand.cpp 54 additions, 0 deletionstest/unit/test_rand.cpp
- test/unit/test_sde.cpp 7 additions, 3 deletionstest/unit/test_sde.cpp
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