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Created with Raphaël 2.2.013Mar62121Feb148765130Jan29241710Dec30Nov2827212016131227Oct2420191820Sep191514131186126Aug24232218171514131116Sep1520Jul26Jan1922Oct7Dec314Oct6525Sep30Apr296325Mar2414Nov1365131Oct3May6Apr20Mar10Dec13Nov629Oct25201514139827Sep241Aug29Jul259828Jun2613121187654131May3029282524232221added documentation for theory predicted mean firing ratesadded documentation of values assigned to the tunanle parameterschanged the default value of cc_weights_factor and the corresponding documentationadded documentation for the scaling of rate_ext onto 5E, 6E in all areas and the 23E anf 5E in area THrestored the change of plot interareal connectivityadded text for the population 4E and 4I of area THremoved the norm of color bar and changed the color schemeimproved the plot titleremoved the norm and limit of color barMerge pull request #2 from didi-hou/functional_connectivityenhance the functional connectivity plotremoved outputsfix the display of functional connectivity plotcorrected typosadjust the functional connectivity plotadd section in notebook to visualize functional conenctivitycreate script to visualize functional connectivitycreate script to compute functional connectivitycreate script to determine communities in the functional connectivitycreate script to compute synaptic inputadd a new section 2.5 for visualize functional connectivityclear notbeook outputsran statistical testmove the files to folder ./testcreate test notebook and file for reference valuesRan the jupyter notebookMerge pull request #60 from didi-hou/Enhance_code_documFixed typosRename file M2E_visualize_firing_rate.py to M2E_firing_rate.py and improved textsFixed the problem when calculating mean firing rateFixed error ploting 3.4 when rate_ext is set as 9.Rename function for plotting network dynamicsCleared outputChanged title of plot 3.1Fixed problem in figure 3.4Cleared outputCorrected typosChanged the areas_simulated back to complete_area_listCorrected the title of figure 3.3Output cleared