Implement for flexible option for initial rates in theory, add parameters to default_params, improve documentation of theory class and theory params in default_params

Remove dependency from h5py_wrapper completely: Store data in binary numpy data files, add test_analysis to test analysis class, fix many bugs in analysis and analysis_helpers

Python scripts defining the framework
Data processing files
Raw data files
Testsuite
Figure scripts for Schmidt et al. (2017)
Images for README