Add instructions for requirements files to README files

figures/Schmidt2018/README.md

@@ -4,12 +4,14 @@ This folder contains the scripts to reproduce all figures of Schmidt M, Bakker R
 
 ![Model overview](../../model_construction.png)
 
-Please note: Figures 2, 5, and 8 show slight deviations from the published figures in the paper. Published Figures 2 and 5 miss a few data points. This error slipped in during the review process. Importantly, the presented fits are identical in the (correct) figures in this repository and in the manuscript. These deviations thus do not affect the scientific conclusions.
-
 Please note that the placement of areas in Figure 7 will deviate from the published figure, because their location depends on the force-directed algorithm implemented in `igraph` and `python-igraph` does not allow manual setting of the random seed for the algorithm. This is a mere visual issue and does not affect the scientific content.
 
 Please note that, since we currently cannot publish the data on Neuronal Densities, Figures 2 and 5 can currently not be produced and executing it throws an error.
 
+Reproducing the figures requires some additional Python packages listed in `additional_requirements.txt`. They can be installed using pip by executing:
+
+`pip install -r additional_requirements.txt`
+
 If snakemake is installed, the figures can be produced by executing
 
 `snakemake`

figures/Schmidt2018_dyn/README.md

@@ -22,6 +22,12 @@ and responses to parametric stimuli in macaque V1, available in the crcns.org da
 
 Figure 8 requires the experimental fMRI data (described by Babapoor-Farrokhran et al. (2013), see Methods section of Schmidt et al. 2018 for more details) that are contained in this repository in `Fig8_exp_func_conn.csv`.
 
+### Requirements
+
+Reproducing the figures requires some additional Python packages listed in `additional_requirements.txt`. They can be installed using pip by executing:
+
+`pip install -r additional_requirements.txt`
+
 ### Snakemake workflow
 
 The entire workflow from raw spike files till the final figures is defined in `Snakefile` and `Snakefile_preprocessing`. If snakemake is installed, the figures can be produced by executing `snakemake`.