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Commit 8c81845f authored by Didi Hou's avatar Didi Hou Committed by Administrator
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1 merge request!35Pre-release MAM v1.1.0
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.ipynb_checkpoints/multi-area-model-checkpoint.ipynb
+ 154
− 48
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figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_interareal_connectivity-checkpoint.py
+ 13
− 7
View file @ 8c81845f
...@@ -36,7 +36,7 @@ def visualize_interareal_connectivity(M): ...@@ -36,7 +36,7 @@ def visualize_interareal_connectivity(M):
pl.rcParams['figure.figsize'] = (width, height) pl.rcParams['figure.figsize'] = (width, height)
fig = pl.figure() fig = pl.figure()
fig.suptitle('Interareal connectivity for full-scale (left) and down-scale (right) multi-area model', fontsize=14, y=1.05) fig.suptitle('Interareal connectivity for full-scale (left) and down-scale (right) multi-area model', fontsize=14, y=1.1)
axes = {} axes = {}
# gs1 = gridspec.GridSpec(2, 2) # gs1 = gridspec.GridSpec(2, 2)
...@@ -122,11 +122,13 @@ def visualize_interareal_connectivity(M): ...@@ -122,11 +122,13 @@ def visualize_interareal_connectivity(M):
ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_xticklabels(area_list, rotation=90, size=6.) # ax.set_xticklabels(area_list, rotation=90, size=6.)
ax.set_xticklabels(area_list, rotation=90, size=10.)
# ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) # ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_yticklabels(area_list[::-1], size=6.) # ax.set_yticklabels(area_list[::-1], size=6.)
ax.set_yticklabels(area_list[::-1], size=10.)
ax.set_ylabel('Target area') ax.set_ylabel('Target area')
ax.set_xlabel('Source area') ax.set_xlabel('Source area')
...@@ -195,11 +197,13 @@ def visualize_interareal_connectivity(M): ...@@ -195,11 +197,13 @@ def visualize_interareal_connectivity(M):
# ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) # ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_xticklabels(area_list, rotation=90, size=6.) # ax.set_xticklabels(area_list, rotation=90, size=6.)
ax.set_xticklabels(area_list, rotation=90, size=10.)
# ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) # ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_yticklabels(area_list[::-1], size=6.) # ax.set_yticklabels(area_list[::-1], size=6.)
ax.set_yticklabels(area_list[::-1], size=10.)
ax.set_ylabel('Target area') ax.set_ylabel('Target area')
ax.set_xlabel('Source area') ax.set_xlabel('Source area')
...@@ -322,11 +326,13 @@ def visualize_interareal_connectivity(M): ...@@ -322,11 +326,13 @@ def visualize_interareal_connectivity(M):
# ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) # ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_xticklabels(area_list, rotation=90, size=6.) # ax.set_xticklabels(area_list, rotation=90, size=6.)
ax.set_xticklabels(area_list, rotation=90, size=10.)
# ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) # ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_yticklabels(area_list[::-1], size=6.) # ax.set_yticklabels(area_list[::-1], size=6.)
ax.set_yticklabels(area_list[::-1], size=10.)
ax.set_ylabel('Target area') ax.set_ylabel('Target area')
ax.set_xlabel('Source area') ax.set_xlabel('Source area')
......
figures/MAM2EBRAINS/M2E_visualize_interareal_connectivity.py
+ 13
− 7
View file @ 8c81845f
...@@ -36,7 +36,7 @@ def visualize_interareal_connectivity(M): ...@@ -36,7 +36,7 @@ def visualize_interareal_connectivity(M):
pl.rcParams['figure.figsize'] = (width, height) pl.rcParams['figure.figsize'] = (width, height)
fig = pl.figure() fig = pl.figure()
fig.suptitle('Interareal connectivity for full-scale (left) and down-scale (right) multi-area model', fontsize=14, y=1.05) fig.suptitle('Interareal connectivity for full-scale (left) and down-scale (right) multi-area model', fontsize=14, y=1.1)
axes = {} axes = {}
# gs1 = gridspec.GridSpec(2, 2) # gs1 = gridspec.GridSpec(2, 2)
...@@ -122,11 +122,13 @@ def visualize_interareal_connectivity(M): ...@@ -122,11 +122,13 @@ def visualize_interareal_connectivity(M):
ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_xticklabels(area_list, rotation=90, size=6.) # ax.set_xticklabels(area_list, rotation=90, size=6.)
ax.set_xticklabels(area_list, rotation=90, size=10.)
# ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) # ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_yticklabels(area_list[::-1], size=6.) # ax.set_yticklabels(area_list[::-1], size=6.)
ax.set_yticklabels(area_list[::-1], size=10.)
ax.set_ylabel('Target area') ax.set_ylabel('Target area')
ax.set_xlabel('Source area') ax.set_xlabel('Source area')
...@@ -195,11 +197,13 @@ def visualize_interareal_connectivity(M): ...@@ -195,11 +197,13 @@ def visualize_interareal_connectivity(M):
# ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) # ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_xticklabels(area_list, rotation=90, size=6.) # ax.set_xticklabels(area_list, rotation=90, size=6.)
ax.set_xticklabels(area_list, rotation=90, size=10.)
# ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) # ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_yticklabels(area_list[::-1], size=6.) # ax.set_yticklabels(area_list[::-1], size=6.)
ax.set_yticklabels(area_list[::-1], size=10.)
ax.set_ylabel('Target area') ax.set_ylabel('Target area')
ax.set_xlabel('Source area') ax.set_xlabel('Source area')
...@@ -322,11 +326,13 @@ def visualize_interareal_connectivity(M): ...@@ -322,11 +326,13 @@ def visualize_interareal_connectivity(M):
# ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) # ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_xticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_xticklabels(area_list, rotation=90, size=6.) # ax.set_xticklabels(area_list, rotation=90, size=6.)
ax.set_xticklabels(area_list, rotation=90, size=10.)
# ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)]) # ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list) + 1, 1)])
ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)]) ax.set_yticks([i + 0.5 for i in np.arange(0, len(area_list), 1)])
ax.set_yticklabels(area_list[::-1], size=6.) # ax.set_yticklabels(area_list[::-1], size=6.)
ax.set_yticklabels(area_list[::-1], size=10.)
ax.set_ylabel('Target area') ax.set_ylabel('Target area')
ax.set_xlabel('Source area') ax.set_xlabel('Source area')
......
multi-area-model.ipynb
+ 154
− 48
View file @ 8c81845f
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