V4 (#1111)
* Mixed subtree processing (#981) * Refactor tests for test_mixed.py (#1027) * Remove deprecated modules and functions/classes & warnings (#1026, #1032) * Use readonly morphio Morphology by default (#979) * Morphology level radial distance features use the soma as reference point (#1030) * Expose subtree processing from the morph_stats api (#1034) * Remove pyXX prefix for lint, docs, and coverage (#1038) * Fix tutorials and add tutorial testenv (#1039) * Add isort for formatting/linting (#1040) * Add testing of example scripts (#1041) * Make documentation/docstrings testable (#1035) * Add black to neurom, format everything, and add to lint (#1042) * Fix load_morpholgies to always resolve paths (#1047) * allow Morphology objects to be either mut or immut (#1049) * Replace iter_* methods by properties in core objects and improve iter_segments (#1054) * Decouple Morphology constructor from io (#1120) * Move soma methods to functions (#1118)
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- CHANGELOG.rst 18 additions, 0 deletionsCHANGELOG.rst
- doc/Makefile 0 additions, 220 deletionsdoc/Makefile
- doc/clean.sh 0 additions, 2 deletionsdoc/clean.sh
- doc/make.bat 0 additions, 263 deletionsdoc/make.bat
- doc/source/conf.py 41 additions, 40 deletionsdoc/source/conf.py
- doc/source/examples.rst 12 additions, 14 deletionsdoc/source/examples.rst
- doc/source/features.rst 28 additions, 18 deletionsdoc/source/features.rst
- doc/source/heterogeneous.rst 236 additions, 0 deletionsdoc/source/heterogeneous.rst
- doc/source/images/heterogeneous_neurite.png 0 additions, 0 deletionsdoc/source/images/heterogeneous_neurite.png
- doc/source/images/heterogeneous_neuron.png 0 additions, 0 deletionsdoc/source/images/heterogeneous_neuron.png
- doc/source/index.rst 1 addition, 0 deletionsdoc/source/index.rst
- doc/source/migration.rst 123 additions, 5 deletionsdoc/source/migration.rst
- doc/source/quickstart.rst 5 additions, 6 deletionsdoc/source/quickstart.rst
- doc/source/validation.rst 4 additions, 4 deletionsdoc/source/validation.rst
- examples/boxplot.py 1 addition, 2 deletionsexamples/boxplot.py
- examples/density_plot.py 66 additions, 32 deletionsexamples/density_plot.py
- examples/end_to_end_distance.py 29 additions, 20 deletionsexamples/end_to_end_distance.py
- examples/extract_distribution.py 6 additions, 9 deletionsexamples/extract_distribution.py
- examples/features_graph_table.py 6 additions, 9 deletionsexamples/features_graph_table.py
- examples/get_features.py 63 additions, 48 deletionsexamples/get_features.py
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