FSL

Tool, Service name

FSL, FMRIB Software Library

EBRAINS Spack build version

Tool's Level of Abstraction: Bundle/Collection of tools or single tool ? Give link to gitlab issue of each tool part of the collection here.

Collection of tools

Links

	URL
Code	https://git.fmrib.ox.ac.uk/fsl/base
Download page
Documentation	https://fsl.fmrib.ox.ac.uk/fsl/docs/#/
	https://fsl.fmrib.ox.ac.uk/fsl/oldwiki/
Collab Page
KG page
EBRAINS page

Description of the tool, short Description, 2-3 sentences

Field of usage (list to expand): Visualisation, Simulator, Dataset

Type of tool (list to expand): Webservice, API, Desktop app, Library, Dataformat, Jupyter Notebook

Desktop app and list of command line tools

Progress Status (emojis)

🚧 = In Progress ✅ = Done ❌ = To do / not started ‼ = Problem/impossible

Feature	CWL help	CLI	Tested Version	Docker URL help	Comments
fsl	‼	‼	‼	‼	GUI tool
fslroi	❌	❌	❌	❌	❌
fsl_ents	❌	❌	❌	❌	❌
fsl_mrs_proc	❌	❌	❌	❌	❌
fsl_sub	❌	❌	❌	❌	❌
fslcc	❌	❌	❌	❌	❌
fslerrorreport	❌	❌	❌	❌	❌
fslmerge	❌	❌	❌	❌	❌
fslswapdim_exe	❌	❌	❌	❌	❌
fsl_gen_3D	❌	❌	❌	❌	❌
fsl-cluster	❌	❌	❌	❌	❌
fsl_mrs_sim	❌	❌	❌	❌	❌
fsl_sub_config	❌	❌	❌	❌	❌
fslchfiletype	❌	❌	❌	❌	❌
fsleyes	❌	❌	❌	❌	❌
fslmodhd	❌	❌	❌	❌	❌
fslselectvols	❌	❌	❌	❌	❌
fsltclsh	❌	❌	❌	❌	❌
fsl2ascii	❌	❌	❌	❌	❌
fsl_get_standard	❌	❌	❌	❌	❌
fsl_mrsi	❌	❌	❌	❌	❌
fsl_sub_plugin	❌	❌	❌	❌	❌
fslchfiletype_exe	❌	❌	❌	❌	❌
fslfft	❌	❌	❌	❌	❌
fslnotebook	❌	❌	❌	❌	❌
fslsize	❌	❌	❌	❌	❌
fslval	❌	❌	❌	❌	❌
fslFixText	❌	❌	❌	❌	❌
fsl_glm	❌	❌	❌	❌	❌
fsl_mvlm	❌	❌	❌	❌	❌
fsl_sub_report	❌	❌	❌	❌	❌
fslchpixdim	❌	❌	❌	❌	❌
fslhd	❌	❌	❌	❌	❌
fslnvols	❌	❌	❌	❌	❌
fslslice	❌	❌	❌	❌	❌
fslvbm_1_bet	❌	❌	❌	❌	❌
fsl_abspath	❌	❌	❌	❌	❌
fsl_histogram	❌	❌	❌	❌	❌
fsl_prepare_fieldmap	❌	❌	❌	❌	❌
fsl_sub_update	❌	❌	❌	❌	❌
fslcomplex	❌	❌	❌	❌	❌
fslinfo	❌	❌	❌	❌	❌
fslorient	❌	❌	❌	❌	❌
fslsmoothfill	❌	❌	❌	❌	❌
fsl_add_module	❌	❌	❌	❌	❌
fsl_motion_outliers	❌	❌	❌	❌	❌
fsl_reg	❌	❌	❌	❌	❌
fslvbm_2_template	❌	❌	❌	❌	❌
fsl_tsplot	❌	❌	❌	❌	❌
fslcpgeom	❌	❌	❌	❌	❌
fslinterleave	❌	❌	❌	❌	❌
fsl_anat	❌	❌	❌	❌	❌
fslpspec	❌	❌	❌	❌	❌
fslsplit	❌	❌	❌	❌	❌
fslvbm_3_proc	❌	❌	❌	❌	❌
fsl_mrs	❌	❌	❌	❌	❌
fsl_regfilt	❌	❌	❌	❌	❌
fsladd	✅	✅	❌	❌	❌
fslcreatehd	❌	❌	❌	❌	❌
fslipython	❌	❌	❌	❌	❌
fslpython	❌	❌	❌	❌	❌
fslstats	✅	✅	❌	❌	❌
fslversion	❌	❌	❌	❌	❌
fsl_boxplot	❌	❌	❌	❌	❌
fsl_mrs_preproc	❌	❌	❌	❌	❌
fsl_sbca	❌	❌	❌	❌	❌
fslanimate	❌	❌	❌	❌	❌
fslecho	❌	❌	❌	❌	❌
fslmaths	✅	✅	❌	❌	❌
fslpythonw	❌	❌	❌	❌	❌
fslsurfacemaths	❌	❌	❌	❌	❌
fslwish	❌	❌	❌	❌	❌
fsl_deface	❌	❌	❌	❌	❌
fsl_mrs_preproc_edit	❌	❌	❌	❌	❌
fsl_schurprod	❌	❌	❌	❌	❌
fslascii2img	✅	✅	❌	❌	❌
fsledithd	❌	❌	❌	❌	❌
fslmeants	❌	❌	❌	❌	❌
fslreorient2std	❌	❌	❌	❌	❌
fslswapdim	❌	❌	❌	❌	❌

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