fMRIPrep

(we've had a request for this tool from Michael Hanke in WP1, via Xiao Gui. It's not in the current list of EBRAINS tools).

Tool, Service name

fMRIPrep.

EBRAINS Spack build version

No Spack package available

Tool's Level of Abstraction: Bundle/Collection of tools or single tool ? Give link to gitlab issue of each tool part of the collection here.

Links

	URL
Code
Download page
Documentation	https://fmriprep.org/en/stable/
Collab Page
KG page
EBRAINS page

Description of the tool, short Description, 2-3 sentences

Field of usage (list to expand): Visualisation, Simulator, Dataset

Type of tool (list to expand): Webservice, API, Desktop app, Library, Dataformat, Jupyter Notebook

Progress Status (https://gist.github.com/rxaviers/7360908)

🚧 = In Progress ✅ = Done ❌ = To do / not started ‼ = Problem/impossible

Feature	CWL help	CLI	Tested Version	Docker URL help	Comments
fmriprep	✅	✅	❌	docker-registry.ebrains.eu/workflow-components/fmriprep	❌

Test cases

Test case	Status
OpenNeuroDatasets/ds000001	❌ Out of Memory
OpenNeuroDatasets/ds000254.v1.0.0	❌ Out of Memory
OpenNeuroDatasets/ds004130-1.0.0	❌ Out of Memory
OpenNeuroDatasets/ds004131-1.0.1	❌ Out of Memory
OpenNeuroDatasets/ds004993-1.1.2	❌ Out of Memory
OpenNeuroDatasets/ds004996.v1.0.1	❌ Out of Memory
OpenNeuroDatasets/ds005422-1.0.1	❌ Out of Memory

Contacts List of contact mails, developers custodians ...

Contacts