Neurom

Tool, Service name

NeuroM

EBRAINS Spack build version

3.2.2

Tool's Level of Abstraction: Bundle/Collection of tools or single tool ? Give link to gitlab issue of each tool part of the collection here.

Standalone

Links

	URL
Code	https://github.com/BlueBrain/NeuroM.git
Download page	https://pypi.org/project/neurom/
Documentation	https://neurom.readthedocs.io/en/stable/
	https://neurom.readthedocs.io/en/stable/developer.html
Collab Page	https://wiki.ebrains.eu/bin/view/Collabs/technical-coordination/EBRAINS%20components/NeuroM/?srid=tZirutW0
KG page	https://search.kg.ebrains.eu/instances/2a289fbe-a092-4824-bd60-9ca50a617a57
EBRAINS page	https://www.ebrains.eu/tools/neurom

Description of the tool, short Description, 2-3 sentences

NeuroM is a Python toolkit for the analysis and processing of neuron morphologies It includes functionality to analyze (features like radial distances, volumes, neurite type counts, sholl anaylsis, etc.), visualize, and check neuron morphologies (disconnected neurites, duplicated points, zero diameters, etc). It can be used as a library, but also includes a command line interface to perform more common operations.

Field of usage (list to expand): Visualisation, Simulator, Dataset

Type of tool (list to expand): Webservice, API, Desktop app, Library, Dataformat, Jupyter Notebook

Progress Status (https://gist.github.com/rxaviers/7360908)

🚧 = In Progress ✅ = Done ❌ = To do / not started ‼ = Problem/impossible

Feature	CWL	CLI	Tested Version	Docker URL help	Comments
viewer	✅	✅	3.2.2 ‼	docker-registry.ebrains.eu/workflow-components/neurom:esd	viewer does not work with any test case
check	🚧	✅	3.2.2 🚧	docker-registry.ebrains.eu/workflow-components/neurom:esd	Todo File or Directory input, only file input checked
stats	🚧	✅	3.2.2 🚧	docker-registry.ebrains.eu/workflow-components/neurom:esd	Todo File or Directory input, only file input checked

Contacts List of contact mails, developers custodians ...

Contacts