Installation issue: apbs (JUSUF)
Summary
|
|
| Summary |
Spack package build failure |
| Package info |
apbs |
| System |
JUSUF |
| Related |
|
Steps to reproduce the issue
Error message
Error message
==> Installing apbs-3.4.0-voqkemjvj5pr6d6i2ydm64zp2r4i6cwq
==> No binary for apbs-3.4.0-voqkemjvj5pr6d6i2ydm64zp2r4i6cwq found: installing from source
==> Using cached archive: /p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/var/spack/cache/_source-cache/archive/57/572ff606974119430020ec948c78e171d8525fb0e67a56dad937a897cac67461.tar.gz
==> No patches needed for apbs
==> apbs: Executing phase: 'cmake'
==> Error: ProcessError: Command exited with status 1:
'cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/apbs-3.4.0-voqkemjvj5pr6d6i2ydm64zp2r4i6cwq' '-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo' '-DBUILD_TESTING:BOOL=ON' '-DCMAKE_INTERPROCEDURAL_OPTIMIZATION:BOOL=OFF' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON' '-DCMAKE_INSTALL_RPATH:STRING=/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/apbs-3.4.0-voqkemjvj5pr6d6i2ydm64zp2r4i6cwq/lib;/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/apbs-3.4.0-voqkemjvj5pr6d6i2ydm64zp2r4i6cwq/lib64;None' '-DCMAKE_PREFIX_PATH:STRING=/p/usersoftware/swmanage/deepu1/EBRAINS/jusuf/stage2022/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/swig-4.0.2-texujmxsojaoameafana2tozy7iso4ks;/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/suite-sparse-5.10.1-2jd5i4leuyjde7u5ywxmm3wvk5x3m5sd;/p/usersoftware/swmanage/deepu1/EBRAINS/jusuf/stage2022/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/maloc-1.5-aljp6zuzyzx5rjqxh6r6tmuymp4hk7pu;/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/flex-2.6.4-jcy4b27gkm2sajoluusdij4k55jl723f;/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/eigen-3.4.0-3kbkkddgdvbqy7i5ovvtsjeqlvjx6x4v;/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/boost-1.79.0-j2u7pq7o47qawzyc5s7g4nveqnbsfzla;/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/python-3.9.12-564e3zqfw5civpg5qaa7gz7nbjssgwd4;/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/bison-3.8.2-32w4wvmabjtnxmwwfoz5s3gmll46is5a;/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/arpack-ng-3.8.0-g6sa4lsippuf53jmvm7ayyxd7gskymzv;/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/readline-8.1-33avnv6ypihmkkvtft4ybdilwqo7vfda;/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/intel-mkl-2020.4.304-r74lyhqk46wynjchqrk3usfspvlylc6e;/p/scratch/icei-hbp-2020-0003/ebrains-software/spack-installation/spack/opt/spack/linux-rocky8-zen2/gcc-11.2/cmake-3.19.8-hxjy23zrafgvsikzmjzem6j7faoz7q3r' '-DPYTHON_MIN_VERSION=3.9.12' '-DPYTHON_MAX_VERSION=3.9.12' '/tmp/mathioulaki1/spack-stage/spack-stage-apbs-3.4.0-voqkemjvj5pr6d6i2ydm64zp2r4i6cwq/spack-src'
1 error found in build log:
159
160
161 Process XSDK defaults ...
162 USE_XSDK_DEFAULTS = 'FALSE'
163 -- SuperLU will be built as a static library.
164 -- Did not find or specify BLAS so configure to build internal CBLAS ...
165 CMake Error at /tmp/mathioulaki1/spack-stage/spack-stage-apbs-3.4.0-voqkemjvj5pr6d6i2ydm64zp2r4i6cwq/spack-build-voqkemj/_deps/superlu-src/CBLAS/CMakeLists.txt:82 (add_l
ibrary):
166 add_library cannot create target "blas" because another target with the
167 same name already exists. The existing target is a static library created
168 in source directory
169 "/tmp/mathioulaki1/spack-stage/spack-stage-apbs-3.4.0-voqkemjvj5pr6d6i2ydm64zp2r4i6cwq/spack-build-voqkemj/_deps/fetk-src/punc/src/blas".
170 See documentation for policy CMP0002 for more details.
171
See build log for details:
/tmp/mathioulaki1/spack-stage/spack-stage-apbs-3.4.0-voqkemjvj5pr6d6i2ydm64zp2r4i6cwq/spack-build-out.txt
Information on your system
$ spack debug report
* **Spack:** 0.18.1 (13e6f87ef6527954b152eaea303841978e83b992)
* **Python:** 3.6.8
* **Platform:** linux-rocky8-zen2
* **Concretizer:** clingo
Additional information