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Commit d6bb97ff authored by polarbean's avatar polarbean
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add testing framework

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tests/outputs/Nutil_linear_flat/Images/test_s002.png

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tests/outputs/Nutil_linear_flat/Images/test_s003.png

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tests/outputs/Nutil_linear_flat/Images/test_s004.png

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tests/outputs/Nutil_linear_flat/Images/test_s005.png

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type = Quantifier
name =
analysis_type = QUINT
quantifier_input_dir = C:/Users/sharoncy/Documents/GitHub/PyNutil/test_data/PyTest_linear_seg/segmentations
quantifier_atlas_dir = C:/Users/sharoncy/Documents/GitHub/PyNutil/test_data/PyTest_linear_seg/flat_files
label_file = Allen Mouse Brain 2017
custom_label_file =
xml_anchor_file = C:/Users/sharoncy/Documents/GitHub/PyNutil/test_data/PyNutil_testdataset_linear.json
quantifier_output_dir = C:/Users/sharoncy/Documents/GitHub/PyNutil/outputs/Nutil_linear_flat
output_report = All
extraction_color = 0,0,0,255
object_splitting = Yes
object_min_size = 1
global_pixel_scale = 1
quantifier_pixel_scale_unit = pixels
use_custom_masks = No
custom_mask_directory =
custom_mask_color = 255,255,255,255
output_report_type = CSV
custom_region_type = Default
custom_region_file =
coordinate_extraction = All
coordinate_single_point = No
pixel_density = 1
display_label_id = No
output_region_id = Yes
pattern_match = _sXXX
files =
nutil_version = v1.0.0
nutil_version = v1.0.0
nutil_version = v1.0.0
tests/outputs/Nutil_linear_flat/Plots/custom_regions_bars.png

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tests/outputs/Nutil_linear_flat/Plots/custom_regions_pie.png

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tests/outputs/Nutil_linear_flat/Plots/ref_plot_bars.png

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