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Sam Yates authored
* Replace CV cable representation with one which makes it clear to which CV a fork point 'belongs': every fork point belongs to exactly one CV; if a CV representation has cables on two different branches at a fork point, it must have cables on all branches at that fork point, and the fork point is associated with that CV.
* Rework (and simplify) `cv_geometry_from_ends` to suit new representation.
* Add CV child information to `cv_geometry`.
* Add computed pw-constant axial resistivity over cell branches to `fvm_cv_discretization`, so it is available for voltage/current interpolation.
* Extend `location_cv` method: add a new parameter of enum `cv_prefer::type` which instructs `location_cv` on how to resolve locations on CV boundaries.
* Provide pw-constant over cable integration methods for `embed_pwlin`.
* Split out `unique_in_place` to its own header, with unit tests.
* Unit tests to suit.
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Arbor Library

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Arbor is a library for implementing performance portable network simulations of multi-compartment neuron models.

An installation guide and library documentation are available online at Read the Docs.

Submit a ticket if you have any questions or want help.

Citing Arbor

The Arbor software can be cited via Zenodo: DOI.

Previous versions of Arbor can be cited specifically:

  • Version 0.2: DOI
  • Version 0.1: DOI

The following BibTeX entry can be used to cite Arbor:

@INPROCEEDINGS{
    paper:arbor2019,
    author={N. A. {Akar} and B. {Cumming} and V. {Karakasis} and A. {Küsters} and W. {Klijn} and A. {Peyser} and S. {Yates}},
    booktitle={2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP)},
    title={{Arbor --- A Morphologically-Detailed Neural Network Simulation Library for Contemporary High-Performance Computing Architectures}},
    year={2019}, month={feb}, volume={}, number={},
    pages={274--282},
    doi={10.1109/EMPDP.2019.8671560},
    ISSN={2377-5750}}

Alternative citation formats for the paper can be downloaded here, and a preprint is available at arXiv.