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Sam Yates authored
Builds on PR #918 

Prepare public API on `cable_cell` for substitution of discretization implementation in `fvm_layout`.

* Add `mcable_map` for representing cable-wise constant data on a morphology.
* Paint cell ion initial values and physical properties by specific setter types, replacing use of `cable_cell_local_parameter_set`.
* Allow cell default ion/physical properties to be set via same setter types, which set corresponding fields in cell's `default_parameters` field.
* Store placed/painted items each in a `static_typed_map` object in the cable cell implementation class; provide public access method to typed maps.
e7714926

Arbor Library

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Arbor is a library for implementing performance portable network simulations of multi-compartment neuron models.

An installation guide and library documentation are available online at Read the Docs.

Submit a ticket if you have any questions or want help.

Citing Arbor

It is possible to cite specific versions of Arbor used to run a simulation via Zenodo:

  • Version 0.2: DOI
  • Version 0.1: DOI

The following BibTeX can be used to cite Arbor:

@INPROCEEDINGS{
    paper:arbor2019,
    author={N. A. {Akar} and B. {Cumming} and V. {Karakasis} and A. {Küsters} and W. {Klijn} and A. {Peyser} and S. {Yates}},
    booktitle={2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP)},
    title={{Arbor --- A Morphologically-Detailed Neural Network Simulation Library for Contemporary High-Performance Computing Architectures}},
    year={2019}, month={feb}, volume={}, number={},
    pages={274--282},
    doi={10.1109/EMPDP.2019.8671560},
    ISSN={2377-5750}}

Alternative citation formats for the paper can be downloaded here, and a preprint is available at arXiv.