Incorporate symbolic GE code from prototype (with some simplifications) in msparse.hpp, symge.hpp and symge.cpp, together with unit tests. Add two kinetic scheme test cases for validation: test_kin1 (simple exponential scheme) and test_kinlva (combination of exponential gate and a three-species kinetic scheme, modelling a low voltage-activated Calcium channel from Wang, X. J. et al., J. Neurophys. 1991). Adapt numeric HH validation data generation to LVA Ca channel, with explicit stopping at stimulus discontinuities. Add two new validation tests based on above: kinetic.kin1_numeric_ref and kinetic.kinlva_numeric_ref (multicore backend only). Introduce a BlockRewriterBase visitor base class, as an aid for visitors that transform/rewrite procedure bodies; refactor KineticRewriter over this class. Introduce common error_stack mixin class for common functionality across Module and the various procedure rewriters. Implement visitors and public-facin...
| Name | Last commit | Last update |
|---|---|---|
| .. | ||
| data | ||
| ref | ||
| CMakeLists.txt | ||
| README.md | ||
validation/data
~ Generated validation data
validation/ref
~ Reference models
validation/ref/neuron
~ NEURON-based reference models, run with nrniv -python
validation/ref/numeric
~ Direct numerical and analytic models
Data is generated via the validation_data CMake target, which is
a prerequisite for the validation.exe test executable.